Non-Coding RNA Search

Ss1.1-Pig4-TMW8001L03.3

Sequence:


               
               CTTCCTGCTGGCTCCCGCGCTGGTGGCCTTGTTGGTGACACCAGCGCGGGGCCGAAGCGG
GCCAGGGCCACGGGCACTGGGACGCCACCGGGCTGCTGCCGCCGCTCCCGCCCCGCGAGA
TGCGGCGCTTGTGGCCCGCTTCGTGACGAACCTCTGCGACTGGGGCGCGCTGGCCACCAT
CTCCACGCAGGAGGGGGTGCGGGGCAGGCCCTTTGCCGACGTCTTATCTCTCAGCGACGG
CCCCCCAGGCAAGGGCACCGGCGTCCTGTACTTCTATCTTAGCCCGTTGCAGCAATCAGT
AGGCAACTTGCAGGATAATCCATATGCTACGCTGACCATGTCTTTGGCAGAGACTAGTTT
CTGCAGGAAATATGGATTTGATCCTCAAAGTCCCCTCTGTGCTCACACTATACTATCAGG
AACTGTTATCAAGGTGAGTGAAGCAGAAATGGATGTTGCAAAGAATTCATTATTCATTCG
ACACCCTGAGATGAAAACCTGGCCATCCAGTCATAATTGGTTCTTCGCTAAGTTGAATAT
CACGAACATCTGGGTCCTAGACTACTTTGGTGGACCAAAAATAGTGACACCTGAAGAATA
TTATAATGCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCTGCTGGCTCCCGCGCTGGTGGCCTTGTTGGTGACACCAGCGCGGGGCCGAAGCGG
GCCAGGGCCACGGGCACTGGGACGCCACCGGGCTGCTGCCGCCGCTCCCGCCCCGCGAGA
TGCGGCGCTTGTGGCCCGCTTCGTGACGAACCTCTGCGACTGGGGCGCGCTGGCCACCAT
CTCCACGCAGGAGGGGGTGCGGGGCAGGCCCTTTGCCGACGTCTTATCTCTCAGCGACGG
CCCCCCAGGCAAGGGCACCGGCGTCCTGTACTTCTATCTTAGCCCGTTGCAGCAATCAGT
AGGCAACTTGCAGGATAATCCATATGCTACGCTGACCATGTCTTTGGCAGAGACTAGTTT
CTGCAGGAAATATGGATTTGATCCTCAAAGTCCCCTCTGTGCTCACACTATACTATCAGG
AACTGTTATCAAGGTGAGTGAAGCAGAAATGGATGTTGCAAAGAATTCATTATTCATTCG
ACACCCTGAGATGAAAACCTGGCCATCCAGTCATAATTGGTTCTTCGCTAAGTTGAATAT
CACGAACATCTGGGTCCTAGACTACTTTGGTGGACCAAAAATAGTGACACCTGAAGAATA
TTATAATGCCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|37183260|gb|AAQ89430.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|37183260|gb|AAQ89430.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-314, gnl|bosTau2|chr3 (231173-230857)
               

               
               1-314, gnl|Hg17|chr1 (164254595-164254282)
               

               
               1-314, gnl|Mm7|chr1 (165734538-165734851)
               


               
               432-612, gnl|bosTau2|chr3 (224633-224453)
               

               
               432-612, gnl|Hg17|chr1 (164247182-164247002)
               

               
               432-612, gnl|Mm7|chr1 (165741342-165741522)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-314, gnl|bosTau2|chr3 (231173-230857)
               

               
               1-314, gnl|Hg17|chr1 (164254595-164254282)
               

               
               1-314, gnl|Mm7|chr1 (165734538-165734851)
               


               
               432-612, gnl|bosTau2|chr3 (224633-224453)
               

               
               432-612, gnl|Hg17|chr1 (164247182-164247002)
               

               
               432-612, gnl|Mm7|chr1 (165741342-165741522)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               cty (0.10408)

	1-314, gnl\|bosTau2\|chr3 (231173-230857)
	1-314, gnl\|Hg17\|chr1 (164254595-164254282)
	1-314, gnl\|Mm7\|chr1 (165734538-165734851)

	432-612, gnl\|bosTau2\|chr3 (224633-224453)
	432-612, gnl\|Hg17\|chr1 (164247182-164247002)
	432-612, gnl\|Mm7\|chr1 (165741342-165741522)