Non-Coding RNA Search

Ss1.1-Pig4-TMW8001L12.5

Sequence:


               
               TTTTTTTTTTAGGGTCCTCGTCCTGCTTTGTTTGTGCCTGAAGTTTCATTTGAGTTACTG
GTCAAACGGCAAATCAAACGTCTGGAAGAGCCCAGCCTCCGTTGTGTGGAACTGGTTCAT
GAGGAAATGCAAAGGATCATTCAGCACTGTAGCAATTACAGCACACAGGTAATTGTGAAA
TCGAACAGGTTTCAGATTAAGTAGTAAAAAACATGAGGTGGTGGTTTCTTGGAGTAGGAG
GAAATCTAGAAAATAGGCTAAAAGTTAAAAGTCTGCAATTTCCTTATAAAAGCAATTTGA
AATAATATAGTTAAATGTAGCTTCCACATCTGATTCAGTATTTCAGTGATTAATCTTCTT
TTAAACAGCATAGACTGTTTCTTTCTTCCATCATATATAGGAGTTGTTGAGGTTCCCTAA
ACTTCATGATGCCATAGTTGAAGTCGTGACTTGTCTTCTTCGTAAACGGTTGCCTGTTAC
AAATGAAATGGTAAGCTATTATTTCACAAATCATCATCATAATACTGTTAATAAAAGTTA
CTTTGGACAGCTTTCTGATTACTTTAGAGTTAGGCATAATATTTACTAGTGTATTGGGAA
GAAAAAGAAATGAGTTTGTCTTATTTCAAAGGAAACTTCATTAATTATGGTATAAAATGC
TTTTTTCTTCATATTTAATCATTGTTAGTCTGCGGCCACCAATTTTCCTGAAAATGGAGT
TATCGTTAAGGATTGTGAATAGCTTTGCTTGACTACATAGCAGCACTGACCTAATGCAAA
GTTAGTTTTATCTTCTAATCCAGTAAACTGTGCCTTTAGATAGCAAGCTTTTTTTTTTTT
CTTTTCTTTTCTAGGACTGTACCCATGGCACATGGAGGTTCCCAGGTTAGGGAACTGTAG
CCACCGGCCTACACCGCAGCTCACAGCAATGCTGGATCCTTAATCCGCTGAGTGAGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTAGGGTCCTCGTCCTGCTTTGTTTGTGCCTGAAGTTTCATTTGAGTTACTG
GTCAAACGGCAAATCAAACGTCTGGAAGAGCCCAGCCTCCGTTGTGTGGAACTGGTTCAT
GAGGAAATGCAAAGGATCATTCAGCACTGTAGCAATTACAGCACACAGGTAATTGTGAAA
TCGAACAGGTTTCAGATTAAGTAGTAAAAAACATGAGGTGGTGGTTTCTTGGAGTAGGAG
GAAATCTAGAAAATAGGCTAAAAGTTAAAAGTCTGCAATTTCCTTATAAAAGCAATTTGA
AATAATATAGTTAAATGTAGCTTCCACATCTGATTCAGTATTTCAGTGATTAATCTTCTT
TTAAACAGCATAGACTGTTTCTTTCTTCCATCATATATAGGAGTTGTTGAGGTTCCCTAA
ACTTCATGATGCCATAGTTGAAGTCGTGACTTGTCTTCTTCGTAAACGGTTGCCTGTTAC
AAATGAAATGGTAAGCTATTATTTCACAAATCATCATCATAATACTGTTAATAAAAGTTA
CTTTGGACAGCTTTCTGATTACTTTAGAGTTAGGCATAATATTTACTAGTGTATTGGGAA
GAAAAAGAAATGAGTTTGTCTTATTTCAAAGGAAACTTCATTAATTATGGTATAAAATGC
TTTTTTCTTCATATTTAATCATTGTTAGTCTGCGGCCACCAATTTTCCTGAAAATGGAGT
TATCGTTAAGGATTGTGAATAGCTTTGCTTGACTACATAGCAGCACTGACCTAATGCAAA
GTTAGTTTTATCTTCTAATCCAGTAAACTGTGCCTTTAGATAGCAAGCTTTTTTTTTTTT
CTTTTCTTTTCTAGGACTGTACCCATGGCACATGGAGGTTCCCAGGTTAGGGAACTGTAG
CCACCGGCCTACACCGCAGCTCACAGCAATGCTGGATCCTTAATCCGCTGAGTGAGGCCA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-715, gnl|bosTau2|chr5 (47042461-47041766)
               

               
               1-715, gnl|Hg17|chr12 (32775545-32776396)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-715, gnl|bosTau2|chr5 (47042461-47041766)
               

               
               1-715, gnl|Hg17|chr12 (32775545-32776396)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ova (0.129132)

	1-715, gnl\|bosTau2\|chr5 (47042461-47041766)
	1-715, gnl\|Hg17\|chr12 (32775545-32776396)