Ss1.1-Pig4-TMW8001M03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCTCAGTTGTGTAGTTGTGGATGACATTGAGAGGCTGCTTGATTATGTCCCTATTGGC CCTCGATTTTCTAATCTGGTATTGCAGGCTCTTCTTGTGTTACTGAAAAAAGCACCTCCT CAGGGCCGCAAGCTTCTTATCATCGGGACCACTAGCCGCAAAGATGTCCTTCAGGAGATG GAGATGCTTAACGCTTTCAGCACCACCATCCACGTGCCCAACATCGCCACGGGAGAGCAG CTGCTAGAGGCTTTGGAGCTGTTGGGCAACTTCAAGGATAAGGAACGTACCACAATTGCA CAGCAAGTCAAAGGGAAGAAGGTCTGGATCGGGATCAAGAAGTTACTAATGTTGATCGAG ATGTCCCTGCAGATGGACCCTGAATACCGTGTGAGAAAATTCTTGGCCCTCTTAAGAGAA GAAGGAGCTAGCCCCCTGGACTTTGAAAATGAACTATTTTCCAACGCAAAGTGACCAAGA GAAGTGACCAGGGTGAAGATGGCCTAGGATCTTCGCTCAACTTCCTCAAGATACTGGACA AAGTGAAATGTTCCCCACCTTCACCACATGCTCACTCTGCATGATTCGTGCAATAAAACT CCCTTCCTTGTGCTTATTGAGATGTTCCGCTATTTTGTGGAAGGTATAACTTGGCCTTAG GATGCCGCGCTTACCTTTCCCTGCAAGCTGACTCTTCCTTCCTCAGTCTTTAAACGTAGG AGCATACTGTACTGGTGAACACTACACGCTCTCAGCTCCCTGCCCCCGCCGTCACCACCC AGAAGCTCAGCAAACGTGATGATGTTGCAAAACAACAGTTGGCCTATTAGAAGGAAGACT TTCTGCCTGTAAACCAGGAGCAGTGAACAGAGGTATGGGTCCAAGGGGATTATCTTACCA CTCCCCCTCCCCCGTACTTGCGCTAAGGCAACTGGATATTTGGTTAAACGTTCTCCCAGG AAGCTGGTTATCTTTGCCTGAAAAAAACAGGGCTTTGGATCTCTAAGATGCTGTTCTCAA TCATTTTCAGAGATGTTTCCCATGTTACAAGCAGAAGATCTTTCTTAATAGAAAATCGCA GTATTTCTGTGCTGGCTGTGACGTTCCCTTAGTGTAAGTGGTTGGCTGTGTGGTAGGAGA TGCGCTCATCATTACCACTTGGTAGATGTCAGAAACGTGTGAAAGCTCTGTATGGAAAAA GCAGACACCCCTAAACAGAAAGGAGTCACCCAAGTAAGTTGCCGCCCTCGCAGCACTAAT TAGTGTCCAACTCTAAATGGGGCAATCCCTTAGTGTATGTCAAAGGCTTATTCAGCATCG ATTTTGTTTTCCTTAGCCCAACCACTTACCATGTAGCCTTCCTTTAAGTTATCTGTACTC TCTAGCCGCTAAATAAAACACCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCTCAGTTGTGTAGTTGTGGATGACATTGAGAGGCTGCTTGATTATGTCCCTATTGGC CCTCGATTTTCTAATCTGGTATTGCAGGCTCTTCTTGTGTTACTGAAAAAAGCACCTCCT CAGGGCCGCAAGCTTCTTATCATCGGGACCACTAGCCGCAAAGATGTCCTTCAGGAGATG GAGATGCTTAACGCTTTCAGCACCACCATCCACGTGCCCAACATCGCCACGGGAGAGCAG CTGCTAGAGGCTTTGGAGCTGTTGGGCAACTTCAAGGATAAGGAACGTACCACAATTGCA CAGCAAGTCAAAGGGAAGAAGGTCTGGATCGGGATCAAGAAGTTACTAATGTTGATCGAG ATGTCCCTGCAGATGGACCCTGAATACCGTGTGAGAAAATTCTTGGCCCTCTTAAGAGAA GAAGGAGCTAGCCCCCTGGACTTTGAAAATGAACTATTTTCCAACGCAAAGTGACCAAGA GAAGTGACCAGGGTGAAGATGGCCTAGGATCTTCGCTCAACTTCCTCAAGATACTGGACA AAGTGAAATGTTCCCCACCTTCACCACATGCTCACTCTGCATGATTCGTGCAATAAAACT CCCTTCCTTGTGCTTATTGAGATGTTCCGCTATTTTGTGGAAGGTATAACTTGGCCTTAG GATGCCGCGCTTACCTTTCCCTGCAAGCTGACTCTTCCTTCCTCAGTCTTTAAACGTAGG AGCATACTGTACTGGTGAACACTACACGCTCTCAGCTCCCTGCCCCCGCCGTCACCACCC AGAAGCTCAGCAAACGTGATGATGTTGCAAAACAACAGTTGGCCTATTAGAAGGAAGACT TTCTGCCTGTAAACCAGGAGCAGTGAACAGAGGTATGGGTCCAAGGGGATTATCTTACCA CTCCCCCTCCCCCGTACTTGCGCTAAGGCAACTGGATATTTGGTTAAACGTTCTCCCAGG AAGCTGGTTATCTTTGCCTGAAAAAAACAGGGCTTTGGATCTCTAAGATGCTGTTCTCAA TCATTTTCAGAGATGTTTCCCATGTTACAAGCAGAAGATCTTTCTTAATAGAAAATCGCA GTATTTCTGTGCTGGCTGTGACGTTCCCTTAGTGTAAGTGGTTGGCTGTGTGGTAGGAGA TGCGCTCATCATTACCACTTGGTAGATGTCAGAAACGTGTGAAAGCTCTGTATGGAAAAA GCAGACACCCCTAAACAGAAAGGAGTCACCCAAGTAAGTTGCCGCCCTCGCAGCACTAAT TAGTGTCCAACTCTAAATGGGGCAATCCCTTAGTGTATGTCAAAGGCTTATTCAGCATCG ATTTTGTTTTCCTTAGCCCAACCACTTACCATGTAGCCTTCCTTTAAGTTATCTGTACTC TCTAGCCGCTAAATAAAACACCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 150-261, - strand, RNAz p=0.80233 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 150-261, - strand, RNAz p=0.80233 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 120-261, gnl|bosTau2|chr19 (41297265-41297406) | |
| 120-261, gnl|canFam2|chr9 (13143645-13143816) | |
| 120-261, gnl|danRer3|chr3 (30662509-30662662) | |
| 120-261, gnl|dasNov1|scaffold_92656 (3542-3408) | |
| 120-261, gnl|echTel1|scaffold_303019 (18613-18444) | |
| 120-261, gnl|fr1|chrUn (215739783-215739937) | |
| 120-261, gnl|galGal2|chr27 (1733498-1733670) | |
| 120-261, gnl|hg17|chr17 (42182279-42182450) | |
| 120-261, gnl|Hg17|chr17 (42182302-42182443) | |
| 120-261, gnl|loxAfr1|scaffold_8481 (27054-27225) | |
| 120-261, gnl|mm7|chr11 (103937634-103937465) | |
| 120-261, gnl|Mm7|chr11 (103937611-103937470) | |
| 120-261, gnl|monDom2|scaffold_18 (40228228-40228399) | |
| 120-261, gnl|oryCun1|scaffold_175893 (39274-39109) | |
| 120-261, gnl|panTro1|chr19 (62943605-62943434) | |
| 120-261, gnl|rheMac2|chr16 (56077091-56076925) | |
| 120-261, gnl|rn3|chr10 (92993994-92993824) | |
| 120-261, gnl|tetNig1|chr2 (1270276-1270122) | |
| 120-261, gnl|xenTro1|scaffold_58 (815562-815747) | |
| 429-1404, gnl|bosTau2|chr19 (41302230-41303205) | |
| 429-1404, gnl|Hg17|chr17 (42188335-42189314) | |
| 429-1404, gnl|Mm7|chr11 (103932300-103931448) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-261, gnl|bosTau2|chr19 (41297265-41297406) | |
| 120-261, gnl|canFam2|chr9 (13143645-13143816) | |
| 120-261, gnl|danRer3|chr3 (30662509-30662662) | |
| 120-261, gnl|dasNov1|scaffold_92656 (3542-3408) | |
| 120-261, gnl|echTel1|scaffold_303019 (18613-18444) | |
| 120-261, gnl|fr1|chrUn (215739783-215739937) | |
| 120-261, gnl|galGal2|chr27 (1733498-1733670) | |
| 120-261, gnl|hg17|chr17 (42182279-42182450) | |
| 120-261, gnl|Hg17|chr17 (42182302-42182443) | |
| 120-261, gnl|loxAfr1|scaffold_8481 (27054-27225) | |
| 120-261, gnl|mm7|chr11 (103937634-103937465) | |
| 120-261, gnl|Mm7|chr11 (103937611-103937470) | |
| 120-261, gnl|monDom2|scaffold_18 (40228228-40228399) | |
| 120-261, gnl|oryCun1|scaffold_175893 (39274-39109) | |
| 120-261, gnl|panTro1|chr19 (62943605-62943434) | |
| 120-261, gnl|rheMac2|chr16 (56077091-56076925) | |
| 120-261, gnl|rn3|chr10 (92993994-92993824) | |
| 120-261, gnl|tetNig1|chr2 (1270276-1270122) | |
| 120-261, gnl|xenTro1|scaffold_58 (815562-815747) | |
| 429-1404, gnl|bosTau2|chr19 (41302230-41303205) | |
| 429-1404, gnl|Hg17|chr17 (42188335-42189314) | |
| 429-1404, gnl|Mm7|chr11 (103932300-103931448) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| lun (0.300978) | |
| fhi (0.169578) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.300978) | |
| fhi (0.169578) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ecc (0.115035) | |
| spc (0.113366) |