Non-Coding RNA Search

Ss1.1-Pig4-TMW8001N11.5

Sequence:


               
               GGGCCCGCGCGGCGCAGTCCACCTTCAGCATCCCCAATAGCAGCAGCGGCCCGTACGGCT
CGCAGGACTCGGTTCACAGCAGCCCGGAGGACGGCGGCGGCGGCGGCAGCGGCGGCGGCA
GGGACCGGCCGGCGGGCGGGGGCCCCGGCGGGCCGCGCCTGGTGATCGGCTCTTTACCAG
CTCACCTCTCGCCGCACATGTTTGGAGGATTTAAGTGCCCAGTATGCTCAAAATTTGTAC
CCTCAGATGAAATGGATTTGCATCTTGTGATGTGTTTAACAAAGCCAAGAATAACCTATA
ATGAGGATGTACTGAGTAAAGATGCTGGGGAATGTTCAATATGCCTTGAAGAGTTGCAGC
AGGGAGATACGATAGCACGACTGCCTTGTCTATGCATATATCATAAAGGCTGCATAGATG
AATGGTTTGAAGTAAATAGATCTTGCCCTGAGCACCCTTCAGATTAAGCATTTAGCTTCC
TGTTTTATAGGTTTCCTTGTCTTTTCAAGATGCTTGAAAAACTGAGAGGATATGAAGATC
TGTCTCTGGAAAAGCAAAAACAAAAATGCAGGCACACTCAGCCAGAAATCTAAGTTCTGT
GAGACTCAATATGCAGAGATGGACAATCATACAGGAAAAAAAAAATCCCACTCGAGAGGA
CAGTTGCCACAGAACTCAGTGTACCAAACATGCATATAAAGGACACACAGGGATTTTGAA
AATGCTGCATATCCCTTAATAGTCATCCACATAGGTAATACTGATGAACATTTTGTATTC
AGACGCCAAAGTTAACTGATTTAAAAGTTGATTTACTTTTTATTAAGTTCTCTCGAACTG
CGCAACTAGCTGTGTTTGATTTGTTTTGGTTTTCACTTTGGGGTCCCTTTATTTTCCCCA
ACATGATGTTCCTGCATTCATCTGTTCTGAAATTGAACACCACATAGTTTACTTCTTAAA
AACTAAAGTTTTAAATGTGACACCAAGAAATGTAATCAAGCAGTAAAACATTCTCTGAAT
GTAGACAATGATCTCAAGTTCTTCAATTTTTGTTTTTTTCCAAGAGTGGAAAATAGACTT
CTACATAGGAAAGCTAAAGTATGTTAATATTTTAAATTAAAGGTTTAACATTATCAGAAT
GCAGTCCAAAGAGTGAAAATCACGTTACCTACTTATATTTTAATTGATTAAATCTAGGAT
TATCTACTGAATTGCAATTTATTAAATATATTATTTTCTTTTAAATAAAACTGTTCAACA
GTTAATCAGCAATGAATCATCTTGCAGCTATGCAACTTAAAAAAAAAAAATTCACCAGTT
TTAAGTGCTGCCAGCTATAGTAACTTTGTTTTAACGGGTATGTTTGTTTGTTCTTTTAAT
GTAATTATTTTATTGTGCTTTGCATCTCTAAGCAATTTTCCCACATTTGGGTAAAATGTT
TAGCAGGTTGTAAACTTAATAACTTATGAAAAGGGTAAAATAAAATTTCTTGAGTGGAAC
TTGAAATAATTTGAGGGACATTTTTATATACTTTTAAAAATCAGAATTTAATTGGGATGC
CAGATTTATAGCAATTTGCATCTTTAATTTTCCAGATAATCTGGATGTTAGCATTTGATA
AATGATTTTTTTAAAGCAAACATGAAGATTTTGTTAATTTATAATTTATTAATGTTATTA
CTGTAATTGAAAATGTTGGAGACTTTTAAATTCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCGCGCGGCGCAGTCCACCTTCAGCATCCCCAATAGCAGCAGCGGCCCGTACGGCT
CGCAGGACTCGGTTCACAGCAGCCCGGAGGACGGCGGCGGCGGCGGCAGCGGCGGCGGCA
GGGACCGGCCGGCGGGCGGGGGCCCCGGCGGGCCGCGCCTGGTGATCGGCTCTTTACCAG
CTCACCTCTCGCCGCACATGTTTGGAGGATTTAAGTGCCCAGTATGCTCAAAATTTGTAC
CCTCAGATGAAATGGATTTGCATCTTGTGATGTGTTTAACAAAGCCAAGAATAACCTATA
ATGAGGATGTACTGAGTAAAGATGCTGGGGAATGTTCAATATGCCTTGAAGAGTTGCAGC
AGGGAGATACGATAGCACGACTGCCTTGTCTATGCATATATCATAAAGGCTGCATAGATG
AATGGTTTGAAGTAAATAGATCTTGCCCTGAGCACCCTTCAGATTAAGCATTTAGCTTCC
TGTTTTATAGGTTTCCTTGTCTTTTCAAGATGCTTGAAAAACTGAGAGGATATGAAGATC
TGTCTCTGGAAAAGCAAAAACAAAAATGCAGGCACACTCAGCCAGAAATCTAAGTTCTGT
GAGACTCAATATGCAGAGATGGACAATCATACAGGAAAAAAAAAATCCCACTCGAGAGGA
CAGTTGCCACAGAACTCAGTGTACCAAACATGCATATAAAGGACACACAGGGATTTTGAA
AATGCTGCATATCCCTTAATAGTCATCCACATAGGTAATACTGATGAACATTTTGTATTC
AGACGCCAAAGTTAACTGATTTAAAAGTTGATTTACTTTTTATTAAGTTCTCTCGAACTG
CGCAACTAGCTGTGTTTGATTTGTTTTGGTTTTCACTTTGGGGTCCCTTTATTTTCCCCA
ACATGATGTTCCTGCATTCATCTGTTCTGAAATTGAACACCACATAGTTTACTTCTTAAA
AACTAAAGTTTTAAATGTGACACCAAGAAATGTAATCAAGCAGTAAAACATTCTCTGAAT
GTAGACAATGATCTCAAGTTCTTCAATTTTTGTTTTTTTCCAAGAGTGGAAAATAGACTT
CTACATAGGAAAGCTAAAGTATGTTAATATTTTAAATTAAAGGTTTAACATTATCAGAAT
GCAGTCCAAAGAGTGAAAATCACGTTACCTACTTATATTTTAATTGATTAAATCTAGGAT
TATCTACTGAATTGCAATTTATTAAATATATTATTTTCTTTTAAATAAAACTGTTCAACA
GTTAATCAGCAATGAATCATCTTGCAGCTATGCAACTTAAAAAAAAAAAATTCACCAGTT
TTAAGTGCTGCCAGCTATAGTAACTTTGTTTTAACGGGTATGTTTGTTTGTTCTTTTAAT
GTAATTATTTTATTGTGCTTTGCATCTCTAAGCAATTTTCCCACATTTGGGTAAAATGTT
TAGCAGGTTGTAAACTTAATAACTTATGAAAAGGGTAAAATAAAATTTCTTGAGTGGAAC
TTGAAATAATTTGAGGGACATTTTTATATACTTTTAAAAATCAGAATTTAATTGGGATGC
CAGATTTATAGCAATTTGCATCTTTAATTTTCCAGATAATCTGGATGTTAGCATTTGATA
AATGATTTTTTTAAAGCAAACATGAAGATTTTGTTAATTTATAATTTATTAATGTTATTA
CTGTAATTGAAAATGTTGGAGACTTTTAAATTCAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22651444|gb|AAL14867.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22651444|gb|AAL14867.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               842-951, + strand, RNAz p=0.955302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               842-951, + strand, RNAz p=0.955302

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_147128, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_147128, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-208, gnl|bosTau2|chr4 (36561572-36561770)
               

               
               1-208, gnl|echTel1|scaffold_226529 (820-941)
               

               
               1-208, gnl|hg17|chr7 (29497628-29497758)
               

               
               1-208, gnl|Hg17|chr7 (30098491-30098683)
               

               
               1-208, gnl|loxAfr1|scaffold_48139 (8536-8400)
               

               
               1-208, gnl|mm7|chr6 (54780845-54780709)
               

               
               1-208, gnl|Mm7|chr6 (54780639-54780843)
               

               
               1-208, gnl|monDom2|scaffold_7 (90108710-90108816)
               

               
               1-208, gnl|panTro1|chr6_random (27570327-27570439)
               

               
               1-208, gnl|rheMac2|chr3 (95923860-95923993)
               

               
               1-208, gnl|rn3|chr4 (83510006-83509870)
               


               
               293-434, gnl|bosTau2|chr2 (50667597-50667742)
               


               
               803-1287, gnl|bosTau2|chr2 (50667996-50668435)
               

               
               803-1287, gnl|Hg17|chr7 (30179200-30179667)
               

               
               803-1287, gnl|Mm7|chr6 (54852191-54852618)
               


               
               1608-1716, gnl|bosTau2|chr21 (17798671-17798782)
               

               
               1608-1716, gnl|Hg17|chr7 (30179989-30180100)
               

               
               1608-1716, gnl|Mm7|chr6 (54852936-54853047)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-208, gnl|bosTau2|chr4 (36561572-36561770)
               

               
               1-208, gnl|echTel1|scaffold_226529 (820-941)
               

               
               1-208, gnl|hg17|chr7 (29497628-29497758)
               

               
               1-208, gnl|Hg17|chr7 (30098491-30098683)
               

               
               1-208, gnl|loxAfr1|scaffold_48139 (8536-8400)
               

               
               1-208, gnl|mm7|chr6 (54780845-54780709)
               

               
               1-208, gnl|Mm7|chr6 (54780639-54780843)
               

               
               1-208, gnl|monDom2|scaffold_7 (90108710-90108816)
               

               
               1-208, gnl|panTro1|chr6_random (27570327-27570439)
               

               
               1-208, gnl|rheMac2|chr3 (95923860-95923993)
               

               
               1-208, gnl|rn3|chr4 (83510006-83509870)
               


               
               293-434, gnl|bosTau2|chr2 (50667597-50667742)
               


               
               803-1287, gnl|bosTau2|chr2 (50667996-50668435)
               

               
               803-1287, gnl|Hg17|chr7 (30179200-30179667)
               

               
               803-1287, gnl|Mm7|chr6 (54852191-54852618)
               


               
               1608-1716, gnl|bosTau2|chr21 (17798671-17798782)
               

               
               1608-1716, gnl|Hg17|chr7 (30179989-30180100)
               

               
               1608-1716, gnl|Mm7|chr6 (54852936-54853047)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               kid (0.518941)
               

               
               col (0.390016)
               

               
               sin (0.349895)
               

               
               pla (0.267344)
               

               
               ret (0.257467)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.518941)
               

               
               col (0.390016)
               

               
               sin (0.349895)
               

               
               pla (0.267344)
               

               
               ret (0.257467)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	1-208, gnl\|bosTau2\|chr4 (36561572-36561770)
	1-208, gnl\|echTel1\|scaffold_226529 (820-941)
	1-208, gnl\|hg17\|chr7 (29497628-29497758)
	1-208, gnl\|Hg17\|chr7 (30098491-30098683)
	1-208, gnl\|loxAfr1\|scaffold_48139 (8536-8400)
	1-208, gnl\|mm7\|chr6 (54780845-54780709)
	1-208, gnl\|Mm7\|chr6 (54780639-54780843)
	1-208, gnl\|monDom2\|scaffold_7 (90108710-90108816)
	1-208, gnl\|panTro1\|chr6_random (27570327-27570439)
	1-208, gnl\|rheMac2\|chr3 (95923860-95923993)
	1-208, gnl\|rn3\|chr4 (83510006-83509870)

	293-434, gnl\|bosTau2\|chr2 (50667597-50667742)

	803-1287, gnl\|bosTau2\|chr2 (50667996-50668435)
	803-1287, gnl\|Hg17\|chr7 (30179200-30179667)
	803-1287, gnl\|Mm7\|chr6 (54852191-54852618)

	1608-1716, gnl\|bosTau2\|chr21 (17798671-17798782)
	1608-1716, gnl\|Hg17\|chr7 (30179989-30180100)
	1608-1716, gnl\|Mm7\|chr6 (54852936-54853047)

	kid (0.518941)
	col (0.390016)
	sin (0.349895)
	pla (0.267344)
	ret (0.257467)
	ton (0.1755)
	rec (0.17307)
	fhi (0.169578)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	ecc (0.115035)
	jej (0.0989218)