Non-Coding RNA Search

Ss1.1-Pig4-TMW8001P05.3

Sequence:


               
               CCCCACGAGGCCCCGCCCAAACTGATCGAGGAGCGGAGAGATTTCCGCATCAAGGTCTCG
CCCGCCGAAGACCCCCCCGCCACCCTCGGCGCCGGCCTGGCTCACTTCTCGGAGAACCCC
ATCCTCTACCTGCTCCTGCCTCTCATCTTTGTCAACAAGTGCTCATTCGGGTGCAAAGTG
GAGCTCGAGGTTCTGAAGGGGCTGCTGCAGAGCCCCCAGCCCATGCTGCTGGGCCTCCTG
GGCCAGTTTCTGGTCATGCCCTTCTATGCTTTTCTGATGGCTAAGGTCTTCATGCTGCCC
AAGGCCCTGGCTCTGGGCCTCATCCTCACCTGCTCGTCGCCCGGCGGCGGGGGGAGCTAC
CTCTTCAGCCTCCTCCTTGGAGGGGATGTCACCCTGGCCATCTCCATGACTTTCATCTCA
ACAGTGGCGGCCACCGGTTTCCTGCCGCTGTCCTCGGCCGTCTACAGCCGCCTGCTCAGC
ATCCACGAAACACTCCACGTGCCCATTTCCAAGATCCTGGGGACCCTGCTGTTCATCGCC
ATCCCCATAGCAGCAGGCGTGGTGATCAAGTCCAAGCTCCCCAAGTTCTCGCAGCTGCTG
CTGCAGGTCATCAAGCCCTTCAGCTTTGTGCTGCTCCTGGGCGGCCTCTTCCTGGCCTAC
CGCATGGGGGTCTTCATCCTGGCAGGCGTCCGGCTGCCCATCGTGCTGGTGGGCCTCACG
GTGCCCCTGGTGGGCCTCCTGGTGGGCTACTGCCTGGCCACGTGCCTGAAGCTCCCGGTG
GCCCAGCGGCGGACAGTCAGCATTGAGGTTGGGGTGCAAAACAGCCTGCTGGCCTTAGCC
ATGCTGCAGCTGTCTCTCCGCCGCCTTCAAGCCGACTACGCCTCCCAGGCCCCCTTCATC
GTGGCCCTGAGTGGCACCTCCGAGATGCTGGCCTTAGTCATCGGCCACTTCATCTATAGC
AGCGTGTGCACAGTTCCCTGAGGCCCCTCGGGCCAGCTTTTGCCACCCCTAACCCAGCCT
CCGCCCACTTGTCCCCACAGTTCTTGTGTACCAAAGGCCTTTAGTTCTCATGCACTATGC
ACTCAGAAAAATCCAGGCTTATTTTTTTTACTGGTTTTTTATTCTCCAGCTTTCAGTGCC
AAAGAGGCCATGCTGAGTTAGGTAGGTGGGCACTGCCCAGAAAATATATTTCAATAAAAG
AGAGAAGCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACGAGGCCCCGCCCAAACTGATCGAGGAGCGGAGAGATTTCCGCATCAAGGTCTCG
CCCGCCGAAGACCCCCCCGCCACCCTCGGCGCCGGCCTGGCTCACTTCTCGGAGAACCCC
ATCCTCTACCTGCTCCTGCCTCTCATCTTTGTCAACAAGTGCTCATTCGGGTGCAAAGTG
GAGCTCGAGGTTCTGAAGGGGCTGCTGCAGAGCCCCCAGCCCATGCTGCTGGGCCTCCTG
GGCCAGTTTCTGGTCATGCCCTTCTATGCTTTTCTGATGGCTAAGGTCTTCATGCTGCCC
AAGGCCCTGGCTCTGGGCCTCATCCTCACCTGCTCGTCGCCCGGCGGCGGGGGGAGCTAC
CTCTTCAGCCTCCTCCTTGGAGGGGATGTCACCCTGGCCATCTCCATGACTTTCATCTCA
ACAGTGGCGGCCACCGGTTTCCTGCCGCTGTCCTCGGCCGTCTACAGCCGCCTGCTCAGC
ATCCACGAAACACTCCACGTGCCCATTTCCAAGATCCTGGGGACCCTGCTGTTCATCGCC
ATCCCCATAGCAGCAGGCGTGGTGATCAAGTCCAAGCTCCCCAAGTTCTCGCAGCTGCTG
CTGCAGGTCATCAAGCCCTTCAGCTTTGTGCTGCTCCTGGGCGGCCTCTTCCTGGCCTAC
CGCATGGGGGTCTTCATCCTGGCAGGCGTCCGGCTGCCCATCGTGCTGGTGGGCCTCACG
GTGCCCCTGGTGGGCCTCCTGGTGGGCTACTGCCTGGCCACGTGCCTGAAGCTCCCGGTG
GCCCAGCGGCGGACAGTCAGCATTGAGGTTGGGGTGCAAAACAGCCTGCTGGCCTTAGCC
ATGCTGCAGCTGTCTCTCCGCCGCCTTCAAGCCGACTACGCCTCCCAGGCCCCCTTCATC
GTGGCCCTGAGTGGCACCTCCGAGATGCTGGCCTTAGTCATCGGCCACTTCATCTATAGC
AGCGTGTGCACAGTTCCCTGAGGCCCCTCGGGCCAGCTTTTGCCACCCCTAACCCAGCCT
CCGCCCACTTGTCCCCACAGTTCTTGTGTACCAAAGGCCTTTAGTTCTCATGCACTATGC
ACTCAGAAAAATCCAGGCTTATTTTTTTTACTGGTTTTTTATTCTCCAGCTTTCAGTGCC
AAAGAGGCCATGCTGAGTTAGGTAGGTGGGCACTGCCCAGAAAATATATTTCAATAAAAG
AGAGAAGCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               P3_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               P3_MOUSE

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               200-719, - strand, RNAz p=0.974777
               

               
               760-919, + strand, RNAz p=0.985348
               

               
               1100-1203, - strand, RNAz p=0.980047

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-719, - strand, RNAz p=0.974777
               

               
               760-919, + strand, RNAz p=0.985348
               

               
               1100-1203, - strand, RNAz p=0.980047

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-1203, gnl|bosTau2|chrX (14684637-14685850)
               

               
               1-1203, gnl|Hg17|chrX (153280530-153279359)
               

               
               1-1203, gnl|Mm7|chrX (69757080-69755867)
               


               
               120-912, gnl|bosTau2|chr14 (49843666-49842874)
               

               
               120-912, gnl|Hg17|chr8 (82769337-82768545)
               

               
               120-912, gnl|Mm7|chr3 (10343364-10342572)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1203, gnl|bosTau2|chrX (14684637-14685850)
               

               
               1-1203, gnl|Hg17|chrX (153280530-153279359)
               

               
               1-1203, gnl|Mm7|chrX (69757080-69755867)
               


               
               120-912, gnl|bosTau2|chr14 (49843666-49842874)
               

               
               120-912, gnl|Hg17|chr8 (82769337-82768545)
               

               
               120-912, gnl|Mm7|chr3 (10343364-10342572)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cag (0.302389)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

	200-719, - strand, RNAz p=0.974777
	760-919, + strand, RNAz p=0.985348
	1100-1203, - strand, RNAz p=0.980047

	1-1203, gnl\|bosTau2\|chrX (14684637-14685850)
	1-1203, gnl\|Hg17\|chrX (153280530-153279359)
	1-1203, gnl\|Mm7\|chrX (69757080-69755867)

	120-912, gnl\|bosTau2\|chr14 (49843666-49842874)
	120-912, gnl\|Hg17\|chr8 (82769337-82768545)
	120-912, gnl\|Mm7\|chr3 (10343364-10342572)

	cag (0.302389)
	fhi (0.169578)
	pty (0.142714)
	cov (0.132153)
	ebs (0.118301)