Non-Coding RNA Search

Ss1.1-Pig4-TMW8001P06.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTACTATAATCAAAAGTTCTTAGAATGAGAGAAACAGGATAT
TTCTTTGTGTTGGAATTCCACTCACCAAATCTTTCGAAACCTTCAGCTGGAATGGGAATT
ATTTTGGTTTTGTTTGTGTCCCTGGGAGAAATGGTAGAAGAAGCATCAGTATGAAGCCAC
ATCAGTGGGGTTCCAAGAGGGGAGAAAAAAAGAGGCCTTAGTTTCAGGTGAGGCAGCTAC
CAGGTTTAAAGGAGATTAATATTTGTACTCTAAGGAATATCCAGTCAAAGATGCAGAGCG
GGAGCTGTCAGACAATACCAGCTGTGTTTGAATTACTCATGTAAATGGTGAAGAATGGAC
TTAATTATGCTAACAGACTGAAAATCTAGACCGCCATCCTCTGATATACAATTAGAGATG
TTTTTATATAGATCGCCAGCATTATGTGTGTACAAAAGTTAACGTTAGGCTGTGGTGGAG
TAACCCTTTAATGTCAAGGCTCTATTTGGGAAATACACTACAGAAGTTAATGTACAAGGC
TGTGATCTTATGACACCAGTAGAGCAAAACGTAATCGTGTCAGATTAATTCTGTTACACA
GTGTGATTTATTTTTTTTTTTATACTAACCATTTCTTACGGAAAGCAGGTCCTTCGGGAT
GACCCTCTCGCCAGCCCATCACGGGCTCTGCATATTACATGCAGCCGGTGTGGACTGAGA
AGCATTACTTTGTAGATGTGTTTTCAATAAAGAAACCAAATTAGTTTTACATTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTACTATAATCAAAAGTTCTTAGAATGAGAGAAACAGGATAT
TTCTTTGTGTTGGAATTCCACTCACCAAATCTTTCGAAACCTTCAGCTGGAATGGGAATT
ATTTTGGTTTTGTTTGTGTCCCTGGGAGAAATGGTAGAAGAAGCATCAGTATGAAGCCAC
ATCAGTGGGGTTCCAAGAGGGGAGAAAAAAAGAGGCCTTAGTTTCAGGTGAGGCAGCTAC
CAGGTTTAAAGGAGATTAATATTTGTACTCTAAGGAATATCCAGTCAAAGATGCAGAGCG
GGAGCTGTCAGACAATACCAGCTGTGTTTGAATTACTCATGTAAATGGTGAAGAATGGAC
TTAATTATGCTAACAGACTGAAAATCTAGACCGCCATCCTCTGATATACAATTAGAGATG
TTTTTATATAGATCGCCAGCATTATGTGTGTACAAAAGTTAACGTTAGGCTGTGGTGGAG
TAACCCTTTAATGTCAAGGCTCTATTTGGGAAATACACTACAGAAGTTAATGTACAAGGC
TGTGATCTTATGACACCAGTAGAGCAAAACGTAATCGTGTCAGATTAATTCTGTTACACA
GTGTGATTTATTTTTTTTTTTATACTAACCATTTCTTACGGAAAGCAGGTCCTTCGGGAT
GACCCTCTCGCCAGCCCATCACGGGCTCTGCATATTACATGCAGCCGGTGTGGACTGAGA
AGCATTACTTTGTAGATGTGTTTTCAATAAAGAAACCAAATTAGTTTTACATTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5BXC0_SCHJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BXC0_SCHJA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-772, gnl|bosTau2|chr20 (24220339-24219572)
               

               
               15-772, gnl|Hg17|chr5 (36723446-36724191)
               

               
               15-772, gnl|Mm7|chr15 (8464386-8463615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-772, gnl|bosTau2|chr20 (24220339-24219572)
               

               
               15-772, gnl|Hg17|chr5 (36723446-36724191)
               

               
               15-772, gnl|Mm7|chr15 (8464386-8463615)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fce (1.08637)
               

               
               fcc (0.988924)
               

               
               fat (0.294855)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (1.08637)
               

               
               fcc (0.988924)
               

               
               fat (0.294855)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)

	15-772, gnl\|bosTau2\|chr20 (24220339-24219572)
	15-772, gnl\|Hg17\|chr5 (36723446-36724191)
	15-772, gnl\|Mm7\|chr15 (8464386-8463615)

	fce (1.08637)
	fcc (0.988924)
	fat (0.294855)
	ece (0.229305)
	spc (0.226732)
	nms (0.213858)
	eye (0.170503)
	fco (0.157208)
	ski (0.146735)
	hyp (0.142837)
	csk (0.140746)
	ebs (0.118301)