Non-Coding RNA Search

Ss1.1-Pig4-TMW8001P12.5

Sequence:


               
               ATCATCTGGGTCCTCCCATGCAGTGATGGATATCTCACTGCCTACTGGAGTCAATGCAAA
CGCAGAAGACTTAAGAGCTCTTGTAGAAGGGGTGGATCAACTATTAACTGATTATGAAAT
CAAAGATGGACATGTTATTTGTCAGTTGAACTCGATTCCTTCCAATAATTTCCTCTGTGT
TCGATTCCGGATAGTTGAACTTTTTCAAGTTGGGTTTCTGAGTCCTGCTACTTTCACAGT
GTATGAGTACCACAGACCAGATAAACAGTGCACCATGTTTTATAGCATGTCCCAGACCAA
ACTTCAGAAAGTCTGTGAAGGAGTAACGTGCAAATGTGTTGAAGCTGACTGTGGACAAAT
GCAGACAGAAGTGGATCTAACAATCTCTGTAAATACTAGAAAAGAAACAGCATGTAAACC
AGAGATTGCATATGTTTATAAAGTTAAGATCATAGCCATGACTGAAGAAAGTGCTTTTGT
TAAGTACACCGCGTCCCTACTGGATGTCTACAAAGCTGGAGAAGCCGTTGCTGAGAAAGG
CTCTGAAATCACCTTTATTAAAAAGACAACCTGTACGAACGCTAACCTCGAAAAAGGAAA
ACAGTACTTAATTATGGGTAAAGAAGCCCTCCAGATAAAACATAACTTCAATTTCAAGTA
CATTTACCCTTTAGATTCCTCAACCTGGATTGAATATTGGCCTACAGACACTGCTTGTCC
ATCATGCCAAACATTTTTAGCAAATCTAGATGAGTTTACTGAAGACATCTTTTTAAACAA
CTGTGAAAACGCCTAACGAAGGTCAGCTGCATCCAGTTTTCACTATGGCTCTCTGTTGTT
GAAGTTTCTTCCTTTTTTTTCAGCACTCACAGCTGGTCTTATTTGTAAAGCTCACCCTAC
TTAGAATTAGGGACACTTGCTTTCATTAGAGAATGATTTTAAGAGCAGTAACTTTCTGAA
ATAACATGTCCTTGGGGGACACGGAGACAGACACTCATTCCATGGTTATTGGACACCAGA
AGCAATAAATTGGCACCCTCCTAAAACCTACCACTCAGGAATGTTTGCCAGGGACTGAAG
AATAGCCCCAACTGAAATGTAGTATCTTACAAAAACATAGCTTTTGCTTGAAAGAAAATA
CCAAGGAACAGAATACTGATCATTAAAGCCTGACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATCTGGGTCCTCCCATGCAGTGATGGATATCTCACTGCCTACTGGAGTCAATGCAAA
CGCAGAAGACTTAAGAGCTCTTGTAGAAGGGGTGGATCAACTATTAACTGATTATGAAAT
CAAAGATGGACATGTTATTTGTCAGTTGAACTCGATTCCTTCCAATAATTTCCTCTGTGT
TCGATTCCGGATAGTTGAACTTTTTCAAGTTGGGTTTCTGAGTCCTGCTACTTTCACAGT
GTATGAGTACCACAGACCAGATAAACAGTGCACCATGTTTTATAGCATGTCCCAGACCAA
ACTTCAGAAAGTCTGTGAAGGAGTAACGTGCAAATGTGTTGAAGCTGACTGTGGACAAAT
GCAGACAGAAGTGGATCTAACAATCTCTGTAAATACTAGAAAAGAAACAGCATGTAAACC
AGAGATTGCATATGTTTATAAAGTTAAGATCATAGCCATGACTGAAGAAAGTGCTTTTGT
TAAGTACACCGCGTCCCTACTGGATGTCTACAAAGCTGGAGAAGCCGTTGCTGAGAAAGG
CTCTGAAATCACCTTTATTAAAAAGACAACCTGTACGAACGCTAACCTCGAAAAAGGAAA
ACAGTACTTAATTATGGGTAAAGAAGCCCTCCAGATAAAACATAACTTCAATTTCAAGTA
CATTTACCCTTTAGATTCCTCAACCTGGATTGAATATTGGCCTACAGACACTGCTTGTCC
ATCATGCCAAACATTTTTAGCAAATCTAGATGAGTTTACTGAAGACATCTTTTTAAACAA
CTGTGAAAACGCCTAACGAAGGTCAGCTGCATCCAGTTTTCACTATGGCTCTCTGTTGTT
GAAGTTTCTTCCTTTTTTTTCAGCACTCACAGCTGGTCTTATTTGTAAAGCTCACCCTAC
TTAGAATTAGGGACACTTGCTTTCATTAGAGAATGATTTTAAGAGCAGTAACTTTCTGAA
ATAACATGTCCTTGGGGGACACGGAGACAGACACTCATTCCATGGTTATTGGACACCAGA
AGCAATAAATTGGCACCCTCCTAAAACCTACCACTCAGGAATGTTTGCCAGGGACTGAAG
AATAGCCCCAACTGAAATGTAGTATCTTACAAAAACATAGCTTTTGCTTGAAAGAAAATA
CCAAGGAACAGAATACTGATCATTAAAGCCTGACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61846543|ref|XP_583134.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846543|ref|XP_583134.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               961-1078, + strand, RNAz p=0.692873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               961-1078, + strand, RNAz p=0.692873

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001735, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001735, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               154-267, gnl|bosTau2|chr8 (61306217-61306330)
               

               
               154-267, gnl|Hg17|chr9 (120804609-120804496)
               

               
               154-267, gnl|Mm7|chr2 (34998407-34998294)
               


               
               655-1176, gnl|bosTau2|chr8 (61356531-61357049)
               

               
               655-1176, gnl|Hg17|chr9 (120794703-120794177)
               

               
               655-1176, gnl|Mm7|chr2 (34991124-34990649)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-267, gnl|bosTau2|chr8 (61306217-61306330)
               

               
               154-267, gnl|Hg17|chr9 (120804609-120804496)
               

               
               154-267, gnl|Mm7|chr2 (34998407-34998294)
               


               
               655-1176, gnl|bosTau2|chr8 (61356531-61357049)
               

               
               655-1176, gnl|Hg17|chr9 (120794703-120794177)
               

               
               655-1176, gnl|Mm7|chr2 (34991124-34990649)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lun (1.20391)
               

               
               liv (0.877706)
               

               
               col (0.195008)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (1.20391)
               

               
               liv (0.877706)
               

               
               col (0.195008)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

	154-267, gnl\|bosTau2\|chr8 (61306217-61306330)
	154-267, gnl\|Hg17\|chr9 (120804609-120804496)
	154-267, gnl\|Mm7\|chr2 (34998407-34998294)

	655-1176, gnl\|bosTau2\|chr8 (61356531-61357049)
	655-1176, gnl\|Hg17\|chr9 (120794703-120794177)
	655-1176, gnl\|Mm7\|chr2 (34991124-34990649)

	lun (1.20391)
	liv (0.877706)
	col (0.195008)
	kid (0.129735)
	jej (0.0989218)