Non-Coding RNA Search

Ss1.1-Pig4-TMW8002B06.5.5

Sequence:


               
               ACTCTGTTTAAGTAATGAGAACCCATCGTGCTGTGATAAAACACAGAAGCGTGAGTGGTA
AGTGGCGGGGTATTTATTTTGCACACACTATTTGCATTCTCTGTGTATTTAAAAAGTAAA
GAAAGTTGCATCCAGAAGGGTTTTGTTGAAAGGAATACATTTACACTTGGGCTGATGACT
TAAGTTCTTCTGTTGGGTTTTTAATGATTTTTGATCAGAGGTATGGAGCCTTATGATCTG
GATACATTTTATACTAATTTTTCAATGCCTGCATTTAGTTCATGGTAAGAGCAGTGCTGG
TCAAGTCACTGACTTTTTTCTGTACTCACTTATACCATCAAACAAAATCTTCATAAAGCT
AGATTGGTGGTGTTTACACAGTTTCATTTAATCAACTTAGTCTTTTTTGGGAAATGAATT
GTTAGAAATTGACAATGTGTTTGTTCCAGTGACACTGAAACTAGTGGAACAAGAATTGAG
TTTCACAGGGGAACTGACTTTTGGCCTGTAGATGAGGGATATAAAATATTTTCTCTGTTT
TTTCCCCCTGCCCTTTTTGTGTTGTGTACTTCATTTTGTGACTGTGGGGTCAGTTGGAGT
GCTGCTTAACAAGTAACTCTCCTTCCACTCTCAGTGGTCAGAGGCTGCTGTGTAGGACCC
ACACTGGAAGTTTCCAGGTCACAGGACCCAAGTCTTTGTGGGATGTGCCTGAGAGATACC
CCTTGGTGGGTCTAATTCTGAACTTGATGTGTGTGTTAACTGTATTTTAAATCAAGCAGT
ATAAATACACACACATTTGCCTCATGTAGTGGACTTTTATAACAAAAGAGAATTTGGGTT
TCTAATTTACAAATGGCAAATTATTTATCCCTTCCTGGATGCACCAAAGACCAGTAAAGT
TTATAGCTTTTCCATCTATATTTATAAAGCAATACTGTATTATAAAAATCAATATTTTTA
TCACATGCTTGAAATTTTTATTTTGTTCTGTTTTAAAATGTGCACTCTAAACATATCAGA
ACCTTATTTCTTCCTGTGAACTTAAGCTGCCTGCGCACAAAAAAAAAAAAAAAAAAAATT
ACTGAATGGATATGCAGTAGAGTCCATCGGCTCTTAAAAACTGAAAGAAGAAATGAGGTG
AGGAAAACAAGTTATTTGTCCTGAATTACTGTACTGGCTTGACATGGTTGATGGGTACTA
AATCACAAAAGAATCCATTCCAGGTGTGCATGTCTGGGGGTGGGCTGTGACTAGATTAGA
AACTAGCTTTGCATGATGGGAGGGTGTCATCTCCTATCAGCCGCATTTGTTCTGGATAGA
ACAGTAGCCTTCAGTACCACCTTCAGTACCACCAACCTACCACATCAAGTAACGAGGAAG
GAATTGTGAGAATTTACCAAGTCTGTTTTGAGCATTTTGGAAAATGTAAACAAAAATGGC
TAGAACTATAAATGTTTGTACTTCTGATTAAGTTCATGGTTCCTTGTTACCTTATATACC
AGCTATCTTTGGTAGAAGCTACAGCATCCAATTTCCCTGGAAACTCACATTTTTGCATTT
AGCAGATTTTGCAATACCAAAAATCCCAAATCTGATTCTAAAACAAAATGTGAAACAGAA
AGCATTTGGATTCTATTGGTTCAAAAAAATTAAATTCTTTGCAAAACTGAACTTCTCAAC
CAAAAATTGACAATGTCCATGTCAAAATTTTAACTGTTAAGCAGGTAGTTTGTGGCAAAG
ATAGCTAAGTAATGAAGCAAGTCTGAATTTGTGTATACTAATGAGCTGCTTTTTTCTGTT
GAGACTATCATTATTTGTCTTACCCAAGAGGCAATGACCTGAATTGGATGTCTGAAGTAT
AACTTATGCAGGAATAGTTCTGTAAATACATTTAAATAAACTGTAAAGATATTTAATAAA
TATAGTATTTATACTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCTGTTTAAGTAATGAGAACCCATCGTGCTGTGATAAAACACAGAAGCGTGAGTGGTA
AGTGGCGGGGTATTTATTTTGCACACACTATTTGCATTCTCTGTGTATTTAAAAAGTAAA
GAAAGTTGCATCCAGAAGGGTTTTGTTGAAAGGAATACATTTACACTTGGGCTGATGACT
TAAGTTCTTCTGTTGGGTTTTTAATGATTTTTGATCAGAGGTATGGAGCCTTATGATCTG
GATACATTTTATACTAATTTTTCAATGCCTGCATTTAGTTCATGGTAAGAGCAGTGCTGG
TCAAGTCACTGACTTTTTTCTGTACTCACTTATACCATCAAACAAAATCTTCATAAAGCT
AGATTGGTGGTGTTTACACAGTTTCATTTAATCAACTTAGTCTTTTTTGGGAAATGAATT
GTTAGAAATTGACAATGTGTTTGTTCCAGTGACACTGAAACTAGTGGAACAAGAATTGAG
TTTCACAGGGGAACTGACTTTTGGCCTGTAGATGAGGGATATAAAATATTTTCTCTGTTT
TTTCCCCCTGCCCTTTTTGTGTTGTGTACTTCATTTTGTGACTGTGGGGTCAGTTGGAGT
GCTGCTTAACAAGTAACTCTCCTTCCACTCTCAGTGGTCAGAGGCTGCTGTGTAGGACCC
ACACTGGAAGTTTCCAGGTCACAGGACCCAAGTCTTTGTGGGATGTGCCTGAGAGATACC
CCTTGGTGGGTCTAATTCTGAACTTGATGTGTGTGTTAACTGTATTTTAAATCAAGCAGT
ATAAATACACACACATTTGCCTCATGTAGTGGACTTTTATAACAAAAGAGAATTTGGGTT
TCTAATTTACAAATGGCAAATTATTTATCCCTTCCTGGATGCACCAAAGACCAGTAAAGT
TTATAGCTTTTCCATCTATATTTATAAAGCAATACTGTATTATAAAAATCAATATTTTTA
TCACATGCTTGAAATTTTTATTTTGTTCTGTTTTAAAATGTGCACTCTAAACATATCAGA
ACCTTATTTCTTCCTGTGAACTTAAGCTGCCTGCGCACAAAAAAAAAAAAAAAAAAAATT
ACTGAATGGATATGCAGTAGAGTCCATCGGCTCTTAAAAACTGAAAGAAGAAATGAGGTG
AGGAAAACAAGTTATTTGTCCTGAATTACTGTACTGGCTTGACATGGTTGATGGGTACTA
AATCACAAAAGAATCCATTCCAGGTGTGCATGTCTGGGGGTGGGCTGTGACTAGATTAGA
AACTAGCTTTGCATGATGGGAGGGTGTCATCTCCTATCAGCCGCATTTGTTCTGGATAGA
ACAGTAGCCTTCAGTACCACCTTCAGTACCACCAACCTACCACATCAAGTAACGAGGAAG
GAATTGTGAGAATTTACCAAGTCTGTTTTGAGCATTTTGGAAAATGTAAACAAAAATGGC
TAGAACTATAAATGTTTGTACTTCTGATTAAGTTCATGGTTCCTTGTTACCTTATATACC
AGCTATCTTTGGTAGAAGCTACAGCATCCAATTTCCCTGGAAACTCACATTTTTGCATTT
AGCAGATTTTGCAATACCAAAAATCCCAAATCTGATTCTAAAACAAAATGTGAAACAGAA
AGCATTTGGATTCTATTGGTTCAAAAAAATTAAATTCTTTGCAAAACTGAACTTCTCAAC
CAAAAATTGACAATGTCCATGTCAAAATTTTAACTGTTAAGCAGGTAGTTTGTGGCAAAG
ATAGCTAAGTAATGAAGCAAGTCTGAATTTGTGTATACTAATGAGCTGCTTTTTTCTGTT
GAGACTATCATTATTTGTCTTACCCAAGAGGCAATGACCTGAATTGGATGTCTGAAGTAT
AACTTATGCAGGAATAGTTCTGTAAATACATTTAAATAAACTGTAAAGATATTTAATAAA
TATAGTATTTATACTAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               569-763, + strand, RNAz p=0.562343

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               569-763, + strand, RNAz p=0.562343

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1937, gnl|bosTau2|chr17 (30196776-30198705)
               

               
               4-1937, gnl|Hg17|chr12 (109435707-109433770)
               

               
               4-1937, gnl|Mm7|chr5 (121556799-121558543)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1937, gnl|bosTau2|chr17 (30196776-30198705)
               

               
               4-1937, gnl|Hg17|chr12 (109435707-109433770)
               

               
               4-1937, gnl|Mm7|chr5 (121556799-121558543)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               hea (0.817996)
               

               
               ste (0.540833)
               

               
               tbr (0.462535)
               

               
               lin (0.436808)
               

               
               elu (0.385356)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.817996)
               

               
               ste (0.540833)
               

               
               tbr (0.462535)
               

               
               lin (0.436808)
               

               
               elu (0.385356)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	4-1937, gnl\|bosTau2\|chr17 (30196776-30198705)
	4-1937, gnl\|Hg17\|chr12 (109435707-109433770)
	4-1937, gnl\|Mm7\|chr5 (121556799-121558543)

	hea (0.817996)
	ste (0.540833)
	tbr (0.462535)
	lin (0.436808)
	elu (0.385356)
	isp (0.300752)
	bfe (0.299715)
	liv (0.292569)
	ret (0.257467)
	gul (0.177588)
	ill (0.175593)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	fat (0.147427)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	spc (0.113366)
	ldo (0.0970026)