Non-Coding RNA Search

Ss1.1-Pig4-TMW8002B09.5

Sequence:


               
               ATGAAGGCAACAAAGAAGATAAGCCGTGGTTTGATTTCAGAAAATGGTACCAAGTTATGA
AGAAAGCTATTGATGAGAAAAAGCAAAAATGGGAGGAAGCCAGGGCGAAGTATCTATGGA
AAAGTGAAAGGCCACTCTACCACTCAGCCATCGACAAACCAGTGGTCTATAAAAGAAGAG
AAATGGTGGTGAGTCTACAAAAACAATTTAGCACACTGATTGATTCCACGCCCAGTGTTG
AAAAAAGAAGCCCTTCAAGTTTTCAGTTCAACTGGACAGCAGAGGACAGTGATAGAACCT
GTTTCCATGAACACAGCCTCCAGGGGGTCCTGAAGCAGAAAGGCCAGTCACTGACAACCA
AGAATTCCCTGTACTGGCTGAGTACCCAGAAATTCTGTAGAAGCTATTGCAAACATGTGA
CAACCTATGAAGAATCGAATTTTTCTCAGAGTTATCAGTTTATACTAAATCTCTTCTCCT
TCTTGCTAAGAATAAAGACCTCCCTTCTCCATGAAGAAGTAAGCTTGATTGAAAAGAGAC
TTTTTAAAACAAAATACACTAAAACAACAAAGAAATCTTCAAGATCCAGAAAAGCGAGAA
AAAGTTGAGAAAAAACAAATGGAAAAATTGGGGCGGGAGGAGGGGTGCACCCATGATATG
TGGAATTTCCTGGGCCGGGGATGGAACCTGTGCCACAGTCATGGCAATGCCAGATCCTCA
ACCCGCTCTGCCACAGAGGAACTTCCAGAAATATTTTAATAGTGATAATAATGTCAAATT
GTAATATGCATTCCAGAGAATGGTGAAAAATAGCATTTAATTGCACACATGTACATACAT
AGACACACACATATATACATACATATGTATTAAACTGCGTGTAAAATGTTTACTGGAAAA
GAGGTGAACTTTGAATTTATTTTTTAAATTGTGAATGTTCTCATTGTTAAAATAGCAGTG
GCGTGGAAATGGCATTCAGAAATTTGTTTTCGTTGTATTTGAAAGCTAAATTTGCTTTTT
AAACTGGATTATTTCCTTACTCTTTATACCCCAGAGTAAATCCCAGATGGATCCAAGATC
TAAACATTATAATTTTGTATATGTATTAGAAGTACGTGTGTTGGAAACGCGGCATTCTGA
TTTGGTTTGTTTATTCATGCAATAAACCCCTATCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAAGGCAACAAAGAAGATAAGCCGTGGTTTGATTTCAGAAAATGGTACCAAGTTATGA
AGAAAGCTATTGATGAGAAAAAGCAAAAATGGGAGGAAGCCAGGGCGAAGTATCTATGGA
AAAGTGAAAGGCCACTCTACCACTCAGCCATCGACAAACCAGTGGTCTATAAAAGAAGAG
AAATGGTGGTGAGTCTACAAAAACAATTTAGCACACTGATTGATTCCACGCCCAGTGTTG
AAAAAAGAAGCCCTTCAAGTTTTCAGTTCAACTGGACAGCAGAGGACAGTGATAGAACCT
GTTTCCATGAACACAGCCTCCAGGGGGTCCTGAAGCAGAAAGGCCAGTCACTGACAACCA
AGAATTCCCTGTACTGGCTGAGTACCCAGAAATTCTGTAGAAGCTATTGCAAACATGTGA
CAACCTATGAAGAATCGAATTTTTCTCAGAGTTATCAGTTTATACTAAATCTCTTCTCCT
TCTTGCTAAGAATAAAGACCTCCCTTCTCCATGAAGAAGTAAGCTTGATTGAAAAGAGAC
TTTTTAAAACAAAATACACTAAAACAACAAAGAAATCTTCAAGATCCAGAAAAGCGAGAA
AAAGTTGAGAAAAAACAAATGGAAAAATTGGGGCGGGAGGAGGGGTGCACCCATGATATG
TGGAATTTCCTGGGCCGGGGATGGAACCTGTGCCACAGTCATGGCAATGCCAGATCCTCA
ACCCGCTCTGCCACAGAGGAACTTCCAGAAATATTTTAATAGTGATAATAATGTCAAATT
GTAATATGCATTCCAGAGAATGGTGAAAAATAGCATTTAATTGCACACATGTACATACAT
AGACACACACATATATACATACATATGTATTAAACTGCGTGTAAAATGTTTACTGGAAAA
GAGGTGAACTTTGAATTTATTTTTTAAATTGTGAATGTTCTCATTGTTAAAATAGCAGTG
GCGTGGAAATGGCATTCAGAAATTTGTTTTCGTTGTATTTGAAAGCTAAATTTGCTTTTT
AAACTGGATTATTTCCTTACTCTTTATACCCCAGAGTAAATCCCAGATGGATCCAAGATC
TAAACATTATAATTTTGTATATGTATTAGAAGTACGTGTGTTGGAAACGCGGCATTCTGA
TTTGGTTTGTTTATTCATGCAATAAACCCCTATCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61840549|ref|XP_588532.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840549|ref|XP_588532.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               441-560, - strand, RNAz p=0.717605

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-560, - strand, RNAz p=0.717605

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               402-625, gnl|bosTau2|chr11 (68103310-68103087)
               

               
               402-625, gnl|canFam2|chr17 (9910452-9910908)
               

               
               402-625, gnl|echTel1|scaffold_36857 (619-175)
               

               
               402-625, gnl|hg17|chr2 (10024388-10024849)
               

               
               402-625, gnl|Hg17|chr2 (10024508-10024727)
               

               
               402-625, gnl|loxAfr1|scaffold_226032 (610-124)
               

               
               402-625, gnl|mm7|chr12 (22394546-22394962)
               

               
               402-625, gnl|Mm7|chr12 (22394660-22394878)
               

               
               402-625, gnl|monDom2|scaffold_1 (127950400-127950889)
               

               
               402-625, gnl|panTro1|chr12 (10703867-10704329)
               

               
               402-625, gnl|rheMac2|chr13 (10033036-10033491)
               

               
               402-625, gnl|rn3|chr6 (42207070-42207513)
               


               
               989-1102, gnl|bosTau2|chr11 (68102668-68102553)
               

               
               989-1102, gnl|Hg17|chr2 (10024977-10025088)
               

               
               989-1102, gnl|Mm7|chr12 (22395237-22395330)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               402-625, gnl|bosTau2|chr11 (68103310-68103087)
               

               
               402-625, gnl|canFam2|chr17 (9910452-9910908)
               

               
               402-625, gnl|echTel1|scaffold_36857 (619-175)
               

               
               402-625, gnl|hg17|chr2 (10024388-10024849)
               

               
               402-625, gnl|Hg17|chr2 (10024508-10024727)
               

               
               402-625, gnl|loxAfr1|scaffold_226032 (610-124)
               

               
               402-625, gnl|mm7|chr12 (22394546-22394962)
               

               
               402-625, gnl|Mm7|chr12 (22394660-22394878)
               

               
               402-625, gnl|monDom2|scaffold_1 (127950400-127950889)
               

               
               402-625, gnl|panTro1|chr12 (10703867-10704329)
               

               
               402-625, gnl|rheMac2|chr13 (10033036-10033491)
               

               
               402-625, gnl|rn3|chr6 (42207070-42207513)
               


               
               989-1102, gnl|bosTau2|chr11 (68102668-68102553)
               

               
               989-1102, gnl|Hg17|chr2 (10024977-10025088)
               

               
               989-1102, gnl|Mm7|chr12 (22395237-22395330)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eye (0.170503)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	402-625, gnl\|bosTau2\|chr11 (68103310-68103087)
	402-625, gnl\|canFam2\|chr17 (9910452-9910908)
	402-625, gnl\|echTel1\|scaffold_36857 (619-175)
	402-625, gnl\|hg17\|chr2 (10024388-10024849)
	402-625, gnl\|Hg17\|chr2 (10024508-10024727)
	402-625, gnl\|loxAfr1\|scaffold_226032 (610-124)
	402-625, gnl\|mm7\|chr12 (22394546-22394962)
	402-625, gnl\|Mm7\|chr12 (22394660-22394878)
	402-625, gnl\|monDom2\|scaffold_1 (127950400-127950889)
	402-625, gnl\|panTro1\|chr12 (10703867-10704329)
	402-625, gnl\|rheMac2\|chr13 (10033036-10033491)
	402-625, gnl\|rn3\|chr6 (42207070-42207513)

	989-1102, gnl\|bosTau2\|chr11 (68102668-68102553)
	989-1102, gnl\|Hg17\|chr2 (10024977-10025088)
	989-1102, gnl\|Mm7\|chr12 (22395237-22395330)

	eye (0.170503)
	lyg (0.133103)
	sug (0.127291)
	pgl (0.118483)
	ecc (0.115035)
	eje (0.0988338)