Non-Coding RNA Search

Ss1.1-Pig4-TMW8002B10.5

Sequence:


               
               GCAACGGCGATCAGACCCCGTGTTCGCTGGGAGGTGTCCTCATTGTTTTACTGCTCTCAC
GTTTTGTTTCGGATTTCAGAACTTTTTCTATGTAAATATTGAAAACTTATGATTTGTGCA
ATAACTCAGATATTTTTTATTTAATTTCATATTTTCACATAAGTTATATTTAAGGGAAGA
GGGAATTTTTTTAAACACGCTTAGATCCTTTCCCGAGTTGCATTTTCTAAGTTGGGTTCA
TCGTGTCGGCTGGCGGGCTGATGAGCAGCCTTAGGAAGGGAGACCTTGGGGAGGGGCCTG
CGTTCCTTCTGTTGGTCGGACGTGAGGCCTCTCAGTTTGTGGTGAAGGAGCCGAGGCCCT
GGCGGGTTTCGGGGGTGGGGTTCAGCTCCGAAGCCTGCTGACCAGCTGCCGGCCGGCTCT
GCGTCTGGCCTGTCCTGCTCTGACCATGGCGTTTGAATGTTTGGGGTTTGGTTTTTTTTT
AAACTAGACAACAGATCCAGCATTTAAAGTGCCAGAGTATAACTTTCTAAAGGGAGAAAA
GGTTGTCACATTATAAAATCTTAAAAAAAAAAATGTGAATTTTGAAATTCCTCAGTGTTA
GTAACATAGCTCGTGATGATGGGTCTGGTTCCGGACGGCGGTACCCAGTTTTAGGAATGT
GGAGAAAGGAATTATGTTGATTCCATTGCGGAATCTGTAGCAGTAAGCACTCGTTCTGTT
AAGAGCATCTCTAAGAGAAGTACTTGAGCTGCTCGGCGCGCGGCTGGGGTGCCTTCACGT
GTCACAGGAGAGCGGGGCCCGGTGCCGGGCCGAGCGGCTGGTGCCCGACTGGAGAAGCCT
ACAGGTGTCCTGTGCAGGTGTCCTCTGCCGTGACAGCACTGTCCTTGTCCCCATTCTTGA
GCGTGAATATACGCATCCTGCCTCCCCCCTGAGTTTCTGGAGCACACAGGTGTCCTGGGA
GTCGGGGGCCCTCCCAGGTCATCCAGCACCCACTGTTAAAGTGGGGGTTCGGGCCCTGTC
AACACTACAGGTGGGCCGGTCCTGGAGCCCACTGGCAGAGAAGGCCGAGGCGGGAAGCTT
GCGCCCACGACCCGGCTGACGTGCGGACGTGGGCAGTAGTGGAGTGGGGTCAGTGTGGCA
GACACCCCAAGGACAAGCTGTATTTGGAAGCGTGACCGGCCACGTGCGTCGCGAGCTGCC
GACCGCGCCCGCGGGCTCTCGGGGCGGCGCCAGAGCAGCGTAGCACACTTGGTCTGCAGC
TCTCGGCGATCGAAGGTTATCAAAAATATTTAAAGATATTTAAATTGTGAACCTATTGAT
AAAGACATATTTATAAAACTGATACGTAGACCCGTACTAATCTCTACACATTAGCAATAT
TGACTGTAACCCTCCATTAAGGAAGCGCCGCGGGGACGCGGGGCGACGTGGGTGCCCCTC
GTGGCGCTCGGCCCCAGGCCCAGGCGCCAGGCTCCCTACCCGTCACGGTGAGCGAATGAA
TTGGGCTGGCCGCCCCGTGGCCACGCGCCACAGGCTTAACAAGACATCATGTTTCAATTT
TTTGTGTGTGTGGACAAAAATGTAGAGGTTCAAATTGACATATTTTTATGTAAAGTTTTT
CTATTCTTTGATTTTTAATAAACTTTGGAAACCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACGGCGATCAGACCCCGTGTTCGCTGGGAGGTGTCCTCATTGTTTTACTGCTCTCAC
GTTTTGTTTCGGATTTCAGAACTTTTTCTATGTAAATATTGAAAACTTATGATTTGTGCA
ATAACTCAGATATTTTTTATTTAATTTCATATTTTCACATAAGTTATATTTAAGGGAAGA
GGGAATTTTTTTAAACACGCTTAGATCCTTTCCCGAGTTGCATTTTCTAAGTTGGGTTCA
TCGTGTCGGCTGGCGGGCTGATGAGCAGCCTTAGGAAGGGAGACCTTGGGGAGGGGCCTG
CGTTCCTTCTGTTGGTCGGACGTGAGGCCTCTCAGTTTGTGGTGAAGGAGCCGAGGCCCT
GGCGGGTTTCGGGGGTGGGGTTCAGCTCCGAAGCCTGCTGACCAGCTGCCGGCCGGCTCT
GCGTCTGGCCTGTCCTGCTCTGACCATGGCGTTTGAATGTTTGGGGTTTGGTTTTTTTTT
AAACTAGACAACAGATCCAGCATTTAAAGTGCCAGAGTATAACTTTCTAAAGGGAGAAAA
GGTTGTCACATTATAAAATCTTAAAAAAAAAAATGTGAATTTTGAAATTCCTCAGTGTTA
GTAACATAGCTCGTGATGATGGGTCTGGTTCCGGACGGCGGTACCCAGTTTTAGGAATGT
GGAGAAAGGAATTATGTTGATTCCATTGCGGAATCTGTAGCAGTAAGCACTCGTTCTGTT
AAGAGCATCTCTAAGAGAAGTACTTGAGCTGCTCGGCGCGCGGCTGGGGTGCCTTCACGT
GTCACAGGAGAGCGGGGCCCGGTGCCGGGCCGAGCGGCTGGTGCCCGACTGGAGAAGCCT
ACAGGTGTCCTGTGCAGGTGTCCTCTGCCGTGACAGCACTGTCCTTGTCCCCATTCTTGA
GCGTGAATATACGCATCCTGCCTCCCCCCTGAGTTTCTGGAGCACACAGGTGTCCTGGGA
GTCGGGGGCCCTCCCAGGTCATCCAGCACCCACTGTTAAAGTGGGGGTTCGGGCCCTGTC
AACACTACAGGTGGGCCGGTCCTGGAGCCCACTGGCAGAGAAGGCCGAGGCGGGAAGCTT
GCGCCCACGACCCGGCTGACGTGCGGACGTGGGCAGTAGTGGAGTGGGGTCAGTGTGGCA
GACACCCCAAGGACAAGCTGTATTTGGAAGCGTGACCGGCCACGTGCGTCGCGAGCTGCC
GACCGCGCCCGCGGGCTCTCGGGGCGGCGCCAGAGCAGCGTAGCACACTTGGTCTGCAGC
TCTCGGCGATCGAAGGTTATCAAAAATATTTAAAGATATTTAAATTGTGAACCTATTGAT
AAAGACATATTTATAAAACTGATACGTAGACCCGTACTAATCTCTACACATTAGCAATAT
TGACTGTAACCCTCCATTAAGGAAGCGCCGCGGGGACGCGGGGCGACGTGGGTGCCCCTC
GTGGCGCTCGGCCCCAGGCCCAGGCGCCAGGCTCCCTACCCGTCACGGTGAGCGAATGAA
TTGGGCTGGCCGCCCCGTGGCCACGCGCCACAGGCTTAACAAGACATCATGTTTCAATTT
TTTGTGTGTGTGGACAAAAATGTAGAGGTTCAAATTGACATATTTTTATGTAAAGTTTTT
CTATTCTTTGATTTTTAATAAACTTTGGAAACCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               283-433, - strand, RNAz p=0.986987
               

               
               467-585, - strand, RNAz p=0.866948
               

               
               922-1038, + strand, RNAz p=0.893112

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-433, - strand, RNAz p=0.986987
               

               
               467-585, - strand, RNAz p=0.866948
               

               
               922-1038, + strand, RNAz p=0.893112

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006999, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006999, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1654, gnl|bosTau2|chr20 (39765382-39763725)
               

               
               1-1654, gnl|Hg17|chr5 (6808418-6810157)
               

               
               1-1654, gnl|Mm7|chr13 (66410225-66408587)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1654, gnl|bosTau2|chr20 (39765382-39763725)
               

               
               1-1654, gnl|Hg17|chr5 (6808418-6810157)
               

               
               1-1654, gnl|Mm7|chr13 (66410225-66408587)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               pla (0.802032)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.802032)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	283-433, - strand, RNAz p=0.986987
	467-585, - strand, RNAz p=0.866948
	922-1038, + strand, RNAz p=0.893112

	1-1654, gnl\|bosTau2\|chr20 (39765382-39763725)
	1-1654, gnl\|Hg17\|chr5 (6808418-6810157)
	1-1654, gnl\|Mm7\|chr13 (66410225-66408587)

	pla (0.802032)
	pgl (0.236967)
	mas (0.210305)
	gul (0.177588)
	ill (0.175593)
	sin (0.174948)
	eye (0.170503)
	fhi (0.169578)
	cli (0.152812)
	lnt (0.142308)
	ssp (0.13552)
	nmm (0.132802)
	ova (0.129132)
	cty (0.10408)
	eje (0.0988338)