Ss1.1-Pig4-TMW8002D10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCACCTAGCTGAACGCTCCAAAATCGGTCAGGCAGCGGCCCGTGACCCCATCCCAGCC TGGATGGGCGGTTTCCCTTTAAGCCCCCAAGGAGCTCTTGGAATCTGTGTTCCAGAAGGA ACACCTGACCTGCCCCAGCACAGAGCCGGTGCTGGTCTCCTGTGAGTACACAGCCAGCGC CCCCGCCTGGATCTCCCCAGAGACTAGCACCATTGTGGGCACCACACATTTTGGCAGGTT TTAGATTGCAAAAGTTGCCTCTTATTTCTTCCTCTCACTGTTTCTTATGTGGTAGGTAAC CTGTCAAGGGGAATTGCCAGTGTTTTAGATGAATCCCAATGCCTTAAAGAAATGCCCTGG AGGCCTGGGAAGACCACTGGAGGCTTAGGATGGGCCTCGGAAACCATCTGTAGAGCTCTT GAGTATTTCATTTAAAAAGAACTGCTGCCCTACCTGATGCCACCCCCCGGGAGGGCCAGC AGCGGCCTCCTTCCTCCTTGTCTGCTTCCTTGAAGTTGTCTGCGGTCACGGCCAAGAAGG TGTGCCTAACCCACATCCCAGGTCTCTCCACCATGTTGGTGACACACGATTACACGGCAG TGAAGGAGGATGAGATAAACGTCTATCAAGGAGAGGTCGTTCAAATTCTGGCCAGCAATC AACAGAACATGTTTCTGGTGTTCCGAGCCGCCACTGACCAGTGCCCCGCAGCTGAGGGCT GGATTCCGGGCTTCGTCCTGGGGCACACCAGTGCAGTCATTGTGGAGAACCCCGATGGGA CTCTCAAGAAGTCAACATCTTGGCACACAGCACTCCGTTTAAGGAAAAAATCTGAGAAAA AAGATAAAGACGGCAAACGGGAAGGCAAGTTAGAGAACGGTTATCGCAAGTCCCGGGAAG GCCTCAGCAACAAGGTATCTGTGAAGCTTCTCAATCCCAACTACATATATGACGTTCCCC CAGAATTCGTCATTCCCTTGAGTGAGGTCACGTGTGAGACCGGGGAGACCGTTGTTCTTA GATGTCGGGTTTGCGGCCGCCCCAAGGCCTCGATCACCTGGAAGGGCCCTGAACACAACA CCTTGAACAACGACGGCCACTACAGCATCTCCTACAGTGACTTGGGAGAGGCCGCTCTGA AGATTGTTGGCGTGACCACGGAAGACGACGGCATCTACACGTGCATCGCAGTGAACGACA TGGGCTCAGCCTCGTCCTCAGCCAGTCTGAGGGTTCTAGGTCCAGGGAGTGATGGCATCA TTGTGACCTGGAGAGACAACTTTGACTGCTTCTACAGCGAAGTGGCTGAACTTGGCAGGG GCAGATTCTCTGTCGTTAAGAAATGTGATCAGAAAGGCACCAAACGAGCCGTGGCCACTA AGTTTGTGAACAAGAAGCTGATGAAGCGTGACCAGGTCACCCACGAGCTTGGAATCCTGC AGAACCTCCAGCACCCGCTGCTTATTGGCCTCCTAGACACCTTCGAGACCCCCACCAGCT ACGTCCTGGTTTTGGAAATGGCTGACCAGGGACGGCTCCTGGACTGTGTGGTGCGATGGG GAAACCTCACGGAAGGGAAGATCAGGGCATATCTGGGGGAGGTTCTAGAAGGTGTCCGAT ACCTTCACAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCACCTAGCTGAACGCTCCAAAATCGGTCAGGCAGCGGCCCGTGACCCCATCCCAGCC TGGATGGGCGGTTTCCCTTTAAGCCCCCAAGGAGCTCTTGGAATCTGTGTTCCAGAAGGA ACACCTGACCTGCCCCAGCACAGAGCCGGTGCTGGTCTCCTGTGAGTACACAGCCAGCGC CCCCGCCTGGATCTCCCCAGAGACTAGCACCATTGTGGGCACCACACATTTTGGCAGGTT TTAGATTGCAAAAGTTGCCTCTTATTTCTTCCTCTCACTGTTTCTTATGTGGTAGGTAAC CTGTCAAGGGGAATTGCCAGTGTTTTAGATGAATCCCAATGCCTTAAAGAAATGCCCTGG AGGCCTGGGAAGACCACTGGAGGCTTAGGATGGGCCTCGGAAACCATCTGTAGAGCTCTT GAGTATTTCATTTAAAAAGAACTGCTGCCCTACCTGATGCCACCCCCCGGGAGGGCCAGC AGCGGCCTCCTTCCTCCTTGTCTGCTTCCTTGAAGTTGTCTGCGGTCACGGCCAAGAAGG TGTGCCTAACCCACATCCCAGGTCTCTCCACCATGTTGGTGACACACGATTACACGGCAG TGAAGGAGGATGAGATAAACGTCTATCAAGGAGAGGTCGTTCAAATTCTGGCCAGCAATC AACAGAACATGTTTCTGGTGTTCCGAGCCGCCACTGACCAGTGCCCCGCAGCTGAGGGCT GGATTCCGGGCTTCGTCCTGGGGCACACCAGTGCAGTCATTGTGGAGAACCCCGATGGGA CTCTCAAGAAGTCAACATCTTGGCACACAGCACTCCGTTTAAGGAAAAAATCTGAGAAAA AAGATAAAGACGGCAAACGGGAAGGCAAGTTAGAGAACGGTTATCGCAAGTCCCGGGAAG GCCTCAGCAACAAGGTATCTGTGAAGCTTCTCAATCCCAACTACATATATGACGTTCCCC CAGAATTCGTCATTCCCTTGAGTGAGGTCACGTGTGAGACCGGGGAGACCGTTGTTCTTA GATGTCGGGTTTGCGGCCGCCCCAAGGCCTCGATCACCTGGAAGGGCCCTGAACACAACA CCTTGAACAACGACGGCCACTACAGCATCTCCTACAGTGACTTGGGAGAGGCCGCTCTGA AGATTGTTGGCGTGACCACGGAAGACGACGGCATCTACACGTGCATCGCAGTGAACGACA TGGGCTCAGCCTCGTCCTCAGCCAGTCTGAGGGTTCTAGGTCCAGGGAGTGATGGCATCA TTGTGACCTGGAGAGACAACTTTGACTGCTTCTACAGCGAAGTGGCTGAACTTGGCAGGG GCAGATTCTCTGTCGTTAAGAAATGTGATCAGAAAGGCACCAAACGAGCCGTGGCCACTA AGTTTGTGAACAAGAAGCTGATGAAGCGTGACCAGGTCACCCACGAGCTTGGAATCCTGC AGAACCTCCAGCACCCGCTGCTTATTGGCCTCCTAGACACCTTCGAGACCCCCACCAGCT ACGTCCTGGTTTTGGAAATGGCTGACCAGGGACGGCTCCTGGACTGTGTGGTGCGATGGG GAAACCTCACGGAAGGGAAGATCAGGGCATATCTGGGGGAGGTTCTAGAAGGTGTCCGAT ACCTTCACAACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 993-1117, - strand, RNAz p=0.871602 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 993-1117, - strand, RNAz p=0.871602 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 565-788, gnl|bosTau2|chr20 (34798750-34798973) | |
| 565-788, gnl|canFam2|chr34 (3290799-3290498) | |
| 565-788, gnl|danRer3|chr19 (58471928-58472224) | |
| 565-788, gnl|dasNov1|scaffold_36191 (1307-1610) | |
| 565-788, gnl|echTel1|scaffold_302638 (47278-47576) | |
| 565-788, gnl|fr1|chrUn (787714-787992) | |
| 565-788, gnl|galGal2|chr2 (76287447-76287126) | |
| 565-788, gnl|hg17|chr5 (14545629-14545935) | |
| 565-788, gnl|Hg17|chr5 (14545701-14545924) | |
| 565-788, gnl|loxAfr1|scaffold_17300 (35838-36135) | |
| 565-788, gnl|mm7|chr15 (27847370-27847071) | |
| 565-788, gnl|Mm7|chr15 (27847299-27847076) | |
| 565-788, gnl|monDom2|scaffold_4 (36411809-36412100) | |
| 565-788, gnl|oryCun1|scaffold_195912 (152654-152955) | |
| 565-788, gnl|panTro1|chr4 (14962921-14963227) | |
| 565-788, gnl|rheMac2|chr6 (14674884-14675190) | |
| 565-788, gnl|rn3|chr2 (79592032-79591733) | |
| 565-788, gnl|tetNig1|chr8 (4006248-4005963) | |
| 565-788, gnl|xenTro1|scaffold_4 (3438995-3439295) | |
| 954-1117, gnl|bosTau2|chr20 (34802059-34802222) | |
| 954-1117, gnl|canFam2|chr34 (3287963-3287771) | |
| 954-1117, gnl|danRer3|chr19 (58474399-58474578) | |
| 954-1117, gnl|dasNov1|scaffold_36191 (4021-4213) | |
| 954-1117, gnl|fr1|chrUn (788346-788530) | |
| 954-1117, gnl|galGal2|chr2 (76284944-76284777) | |
| 954-1117, gnl|hg17|chr5 (14551185-14551380) | |
| 954-1117, gnl|Hg17|chr5 (14551197-14551360) | |
| 954-1117, gnl|loxAfr1|scaffold_23981 (64478-64657) | |
| 954-1117, gnl|mm7|chr15 (27844216-27844025) | |
| 954-1117, gnl|Mm7|chr15 (27844203-27844040) | |
| 954-1117, gnl|monDom2|scaffold_4 (36415686-36415877) | |
| 954-1117, gnl|oryCun1|scaffold_195912 (155480-155672) | |
| 954-1117, gnl|panTro1|chr4 (14968496-14968691) | |
| 954-1117, gnl|rheMac2|chr6 (14680489-14680684) | |
| 954-1117, gnl|rn3|chr2 (79589511-79589319) | |
| 954-1117, gnl|tetNig1|chr8 (4004953-4004776) | |
| 954-1117, gnl|xenTro1|scaffold_4 (3445916-3446093) | |
| 1311-1520, gnl|bosTau2|chr20 (34805925-34806134) | |
| 1311-1520, gnl|canFam2|chr34 (3284306-3284063) | |
| 1311-1520, gnl|danRer3|chr19 (58479154-58479390) | |
| 1311-1520, gnl|dasNov1|scaffold_36191 (9469-9712) | |
| 1311-1520, gnl|echTel1|scaffold_313955 (3058-3301) | |
| 1311-1520, gnl|fr1|chrUn (788963-789195) | |
| 1311-1520, gnl|galGal2|chr2 (76281086-76280842) | |
| 1311-1520, gnl|hg17|chr5 (14557482-14557725) | |
| 1311-1520, gnl|Hg17|chr5 (14557494-14557703) | |
| 1311-1520, gnl|loxAfr1|scaffold_111174 (1059-1304) | |
| 1311-1520, gnl|mm7|chr15 (27838725-27838482) | |
| 1311-1520, gnl|Mm7|chr15 (27838711-27838502) | |
| 1311-1520, gnl|monDom2|scaffold_4 (36417997-36418242) | |
| 1311-1520, gnl|panTro1|chr4 (14974805-14975048) | |
| 1311-1520, gnl|rheMac2|chr6 (14686722-14686965) | |
| 1311-1520, gnl|rn3|chr2 (79584669-79584425) | |
| 1311-1520, gnl|tetNig1|chr8 (4004300-4004095) | |
| 1311-1520, gnl|xenTro1|scaffold_4 (3450987-3451228) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 565-788, gnl|bosTau2|chr20 (34798750-34798973) | |
| 565-788, gnl|canFam2|chr34 (3290799-3290498) | |
| 565-788, gnl|danRer3|chr19 (58471928-58472224) | |
| 565-788, gnl|dasNov1|scaffold_36191 (1307-1610) | |
| 565-788, gnl|echTel1|scaffold_302638 (47278-47576) | |
| 565-788, gnl|fr1|chrUn (787714-787992) | |
| 565-788, gnl|galGal2|chr2 (76287447-76287126) | |
| 565-788, gnl|hg17|chr5 (14545629-14545935) | |
| 565-788, gnl|Hg17|chr5 (14545701-14545924) | |
| 565-788, gnl|loxAfr1|scaffold_17300 (35838-36135) | |
| 565-788, gnl|mm7|chr15 (27847370-27847071) | |
| 565-788, gnl|Mm7|chr15 (27847299-27847076) | |
| 565-788, gnl|monDom2|scaffold_4 (36411809-36412100) | |
| 565-788, gnl|oryCun1|scaffold_195912 (152654-152955) | |
| 565-788, gnl|panTro1|chr4 (14962921-14963227) | |
| 565-788, gnl|rheMac2|chr6 (14674884-14675190) | |
| 565-788, gnl|rn3|chr2 (79592032-79591733) | |
| 565-788, gnl|tetNig1|chr8 (4006248-4005963) | |
| 565-788, gnl|xenTro1|scaffold_4 (3438995-3439295) | |
| 954-1117, gnl|bosTau2|chr20 (34802059-34802222) | |
| 954-1117, gnl|canFam2|chr34 (3287963-3287771) | |
| 954-1117, gnl|danRer3|chr19 (58474399-58474578) | |
| 954-1117, gnl|dasNov1|scaffold_36191 (4021-4213) | |
| 954-1117, gnl|fr1|chrUn (788346-788530) | |
| 954-1117, gnl|galGal2|chr2 (76284944-76284777) | |
| 954-1117, gnl|hg17|chr5 (14551185-14551380) | |
| 954-1117, gnl|Hg17|chr5 (14551197-14551360) | |
| 954-1117, gnl|loxAfr1|scaffold_23981 (64478-64657) | |
| 954-1117, gnl|mm7|chr15 (27844216-27844025) | |
| 954-1117, gnl|Mm7|chr15 (27844203-27844040) | |
| 954-1117, gnl|monDom2|scaffold_4 (36415686-36415877) | |
| 954-1117, gnl|oryCun1|scaffold_195912 (155480-155672) | |
| 954-1117, gnl|panTro1|chr4 (14968496-14968691) | |
| 954-1117, gnl|rheMac2|chr6 (14680489-14680684) | |
| 954-1117, gnl|rn3|chr2 (79589511-79589319) | |
| 954-1117, gnl|tetNig1|chr8 (4004953-4004776) | |
| 954-1117, gnl|xenTro1|scaffold_4 (3445916-3446093) | |
| 1311-1520, gnl|bosTau2|chr20 (34805925-34806134) | |
| 1311-1520, gnl|canFam2|chr34 (3284306-3284063) | |
| 1311-1520, gnl|danRer3|chr19 (58479154-58479390) | |
| 1311-1520, gnl|dasNov1|scaffold_36191 (9469-9712) | |
| 1311-1520, gnl|echTel1|scaffold_313955 (3058-3301) | |
| 1311-1520, gnl|fr1|chrUn (788963-789195) | |
| 1311-1520, gnl|galGal2|chr2 (76281086-76280842) | |
| 1311-1520, gnl|hg17|chr5 (14557482-14557725) | |
| 1311-1520, gnl|Hg17|chr5 (14557494-14557703) | |
| 1311-1520, gnl|loxAfr1|scaffold_111174 (1059-1304) | |
| 1311-1520, gnl|mm7|chr15 (27838725-27838482) | |
| 1311-1520, gnl|Mm7|chr15 (27838711-27838502) | |
| 1311-1520, gnl|monDom2|scaffold_4 (36417997-36418242) | |
| 1311-1520, gnl|panTro1|chr4 (14974805-14975048) | |
| 1311-1520, gnl|rheMac2|chr6 (14686722-14686965) | |
| 1311-1520, gnl|rn3|chr2 (79584669-79584425) | |
| 1311-1520, gnl|tetNig1|chr8 (4004300-4004095) | |
| 1311-1520, gnl|xenTro1|scaffold_4 (3450987-3451228) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) |