Ss1.1-Pig4-TMW8002E13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGAAACTCCATTGGAAGAAGCTATTAAATTTTTAACTCCGTTGAAGAACTTGGTGAAG AACAAGATAGAAACTCATCTTTTTGCCTTTGAGATTTACTTTAGGAAAGAAAAGTTTCTT TTGATGCTACAATCAGTAAAGAGGGCATTTGCTATTGATTCTAGTCATCCCTGGCTTCAT GAATGTATGATTCGACTCTTTAGTACTGTGTGTGAAAGTAAAGATTTACCTGATACAGTT AGGACAGTATTAAAACAAGAAATGAATCGTCTTTTTGGAGCAACGAATCCAAAGAATTTT AATGAAACTTTTCTGAAAAGGAATTCTGATTCATTGCCACATAGATTATCAGCTGCCAAA ATGGTATATTATTTAGATTCTTCTAGTCAGAAGCGAGCTATAGAGTTGGCAACAACACTT GATGAATCCCTCACTAACAGAAACCTCCAGACATGTATGGAGGTATTAGAAGCCTTGTGT GATGGTAGCCTGGGAGACTGTAAAGAAGCTGCTGAGGTTTATAGAGCAAATTGTCATAAG CTTTTCCCTTATGCTTTGGCTTTCATGCCTCCTGGATATGAAGAGGATATGAAGATCACA GTTAATGGAGATAGTTCTGCAGAAACTGAAGAACTGGCCAATGAAATTTGAACATCATTA AACAAGCAAATGGAATGACTTTGGACCATATCTAGTGTATAATATTTTTGTCACGCACCT GCTGCATTGCTCTAACTTACACAGAATGAGAAGAGTAAATGTTCTTGCCTTCAAATAGTG TTTTACGTTTTTTATCCTGCTGAAAAAGTATATATAAAATATCTAACATATTACAGGATA TAGGTTCAGTTTCTTAAAAAATTAAAAGCTGCTAAAATTGAGGGGTTAAAAATACCTTAT CCTATTCCTACCTACCCACCAATGTTTTTAAACTAATTTATATAAAATCTGGAGGCTGTT ACAGCTAACAAAGCAGGTGTGTGGCAGAAATATTACTTTAAATTTGTCTTGTGAGATTTT ACTATATCTCAGACAGCTAAATGCTGTTTTAGCACTGGATTCTTTCACTGAGCACAAAGT TGTTGGGGCTTTAGCATCTGACTGATTTTGTTACGGGGTTGATTCTGACCATAGGAAGTA TGCAATGTGAATCACTATTTACAGAGAAACCTACAACAGATGCTTGATGTTGTAGATGCT GGGACATAGATACCAAGCAGAATTACAAGAAACCTAGAGGGTGTTCAATACGCTTGTTGT GTTTCCAAAATTCACTGTACATGATCAGTTTGGTGTTCTTGTACCACAGTTTTTAACTGA AGGAACCAGTTGGAACAATCTCAATTTTAACTAAAACTTGAAGAACTAAAATAACAATGC GAACCTTTCGGCATTGTTTTGGCCAAACTTGTTAAAACTGTAATGCAAGAACCAAATGCA CTGTGATGTGGCACCAACTAATTAGCATGAATTTTTTTCACCCAAGAGTGAAAAAAGAAA ATCTACCATGGCTTGAAGTTAAAGAGCAGAACTCCTGACTACCATTCTATGACTGATCAA GAGACTAATAGTTAAAAACCTCAGCAGGCCTTGTTCATGATATGCAGAAAAAAAAAGTGC TGCAGTTTAGATACCTCTGGAATTTTTCCACAGTGTCACAGGTTTGTAATACTTGAAGCC CTACATTTCTAAGAATATATTTCTTGCTCAGTTGTTTCAGGCAAGCCCAAGACTTTGTAA TTTTTAAAGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGAAACTCCATTGGAAGAAGCTATTAAATTTTTAACTCCGTTGAAGAACTTGGTGAAG AACAAGATAGAAACTCATCTTTTTGCCTTTGAGATTTACTTTAGGAAAGAAAAGTTTCTT TTGATGCTACAATCAGTAAAGAGGGCATTTGCTATTGATTCTAGTCATCCCTGGCTTCAT GAATGTATGATTCGACTCTTTAGTACTGTGTGTGAAAGTAAAGATTTACCTGATACAGTT AGGACAGTATTAAAACAAGAAATGAATCGTCTTTTTGGAGCAACGAATCCAAAGAATTTT AATGAAACTTTTCTGAAAAGGAATTCTGATTCATTGCCACATAGATTATCAGCTGCCAAA ATGGTATATTATTTAGATTCTTCTAGTCAGAAGCGAGCTATAGAGTTGGCAACAACACTT GATGAATCCCTCACTAACAGAAACCTCCAGACATGTATGGAGGTATTAGAAGCCTTGTGT GATGGTAGCCTGGGAGACTGTAAAGAAGCTGCTGAGGTTTATAGAGCAAATTGTCATAAG CTTTTCCCTTATGCTTTGGCTTTCATGCCTCCTGGATATGAAGAGGATATGAAGATCACA GTTAATGGAGATAGTTCTGCAGAAACTGAAGAACTGGCCAATGAAATTTGAACATCATTA AACAAGCAAATGGAATGACTTTGGACCATATCTAGTGTATAATATTTTTGTCACGCACCT GCTGCATTGCTCTAACTTACACAGAATGAGAAGAGTAAATGTTCTTGCCTTCAAATAGTG TTTTACGTTTTTTATCCTGCTGAAAAAGTATATATAAAATATCTAACATATTACAGGATA TAGGTTCAGTTTCTTAAAAAATTAAAAGCTGCTAAAATTGAGGGGTTAAAAATACCTTAT CCTATTCCTACCTACCCACCAATGTTTTTAAACTAATTTATATAAAATCTGGAGGCTGTT ACAGCTAACAAAGCAGGTGTGTGGCAGAAATATTACTTTAAATTTGTCTTGTGAGATTTT ACTATATCTCAGACAGCTAAATGCTGTTTTAGCACTGGATTCTTTCACTGAGCACAAAGT TGTTGGGGCTTTAGCATCTGACTGATTTTGTTACGGGGTTGATTCTGACCATAGGAAGTA TGCAATGTGAATCACTATTTACAGAGAAACCTACAACAGATGCTTGATGTTGTAGATGCT GGGACATAGATACCAAGCAGAATTACAAGAAACCTAGAGGGTGTTCAATACGCTTGTTGT GTTTCCAAAATTCACTGTACATGATCAGTTTGGTGTTCTTGTACCACAGTTTTTAACTGA AGGAACCAGTTGGAACAATCTCAATTTTAACTAAAACTTGAAGAACTAAAATAACAATGC GAACCTTTCGGCATTGTTTTGGCCAAACTTGTTAAAACTGTAATGCAAGAACCAAATGCA CTGTGATGTGGCACCAACTAATTAGCATGAATTTTTTTCACCCAAGAGTGAAAAAAGAAA ATCTACCATGGCTTGAAGTTAAAGAGCAGAACTCCTGACTACCATTCTATGACTGATCAA GAGACTAATAGTTAAAAACCTCAGCAGGCCTTGTTCATGATATGCAGAAAAAAAAAGTGC TGCAGTTTAGATACCTCTGGAATTTTTCCACAGTGTCACAGGTTTGTAATACTTGAAGCC CTACATTTCTAAGAATATATTTCTTGCTCAGTTGTTTCAGGCAAGCCCAAGACTTTGTAA TTTTTAAAGGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 953-1067, - strand, RNAz p=0.585429 | |
| 1302-1421, - strand, RNAz p=0.88256 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 953-1067, - strand, RNAz p=0.585429 | |
| 1302-1421, - strand, RNAz p=0.88256 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr17 (12817028-12816920) | |
| 1-109, gnl|canFam2|chr19 (6324466-6324319) | |
| 1-109, gnl|danRer3|chrUn (148567907-148568038) | |
| 1-109, gnl|dasNov1|scaffold_19844 (6890-7037) | |
| 1-109, gnl|echTel1|scaffold_289926 (912-765) | |
| 1-109, gnl|fr1|chrUn (272942616-272942500) | |
| 1-109, gnl|galGal2|chr4 (29782082-29782228) | |
| 1-109, gnl|hg17|chr4 (140655091-140655238) | |
| 1-109, gnl|Hg17|chr4 (140655124-140655232) | |
| 1-109, gnl|loxAfr1|scaffold_9403 (33128-33250) | |
| 1-109, gnl|mm7|chr3 (51587760-51587906) | |
| 1-109, gnl|Mm7|chr3 (51587792-51587900) | |
| 1-109, gnl|monDom2|scaffold_9 (6862738-6862885) | |
| 1-109, gnl|oryCun1|scaffold_163903 (848-995) | |
| 1-109, gnl|panTro1|chr3 (157904928-157905075) | |
| 1-109, gnl|rheMac2|chr5 (131841464-131841611) | |
| 1-109, gnl|rn3|chr2 (140311728-140311875) | |
| 1-109, gnl|tetNig1|chrUn_random (8142929-8143049) | |
| 1-109, gnl|xenTro1|scaffold_429 (128081-128238) | |
| 208-352, gnl|bosTau2|chr17 (12810219-12810075) | |
| 208-352, gnl|canFam2|chr19 (6315432-6315278) | |
| 208-352, gnl|danRer3|chrUn (148568751-148568900) | |
| 208-352, gnl|dasNov1|scaffold_19844 (13048-13202) | |
| 208-352, gnl|fr1|chrUn (307724291-307724136) | |
| 208-352, gnl|galGal2|chr4 (29783432-29783582) | |
| 208-352, gnl|hg17|chr4 (140663592-140663746) | |
| 208-352, gnl|Hg17|chr4 (140663593-140663737) | |
| 208-352, gnl|loxAfr1|scaffold_9403 (38686-38840) | |
| 208-352, gnl|mm7|chr3 (51594612-51594766) | |
| 208-352, gnl|Mm7|chr3 (51594613-51594757) | |
| 208-352, gnl|monDom2|scaffold_9 (6870677-6870831) | |
| 208-352, gnl|oryCun1|scaffold_213726 (41472-41626) | |
| 208-352, gnl|panTro1|chr3 (157913903-157914057) | |
| 208-352, gnl|rheMac2|chr5 (131850458-131850612) | |
| 208-352, gnl|rn3|chr2 (140315846-140316000) | |
| 208-352, gnl|tetNig1|chrUn_random (8143314-8143463) | |
| 208-352, gnl|xenTro1|scaffold_429 (129774-129923) | |
| 445-1752, gnl|bosTau2|chr17 (12808060-12806742) | |
| 445-1752, gnl|Hg17|chr4 (140666637-140667947) | |
| 445-1752, gnl|Mm7|chr3 (51597122-51598438) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr17 (12817028-12816920) | |
| 1-109, gnl|canFam2|chr19 (6324466-6324319) | |
| 1-109, gnl|danRer3|chrUn (148567907-148568038) | |
| 1-109, gnl|dasNov1|scaffold_19844 (6890-7037) | |
| 1-109, gnl|echTel1|scaffold_289926 (912-765) | |
| 1-109, gnl|fr1|chrUn (272942616-272942500) | |
| 1-109, gnl|galGal2|chr4 (29782082-29782228) | |
| 1-109, gnl|hg17|chr4 (140655091-140655238) | |
| 1-109, gnl|Hg17|chr4 (140655124-140655232) | |
| 1-109, gnl|loxAfr1|scaffold_9403 (33128-33250) | |
| 1-109, gnl|mm7|chr3 (51587760-51587906) | |
| 1-109, gnl|Mm7|chr3 (51587792-51587900) | |
| 1-109, gnl|monDom2|scaffold_9 (6862738-6862885) | |
| 1-109, gnl|oryCun1|scaffold_163903 (848-995) | |
| 1-109, gnl|panTro1|chr3 (157904928-157905075) | |
| 1-109, gnl|rheMac2|chr5 (131841464-131841611) | |
| 1-109, gnl|rn3|chr2 (140311728-140311875) | |
| 1-109, gnl|tetNig1|chrUn_random (8142929-8143049) | |
| 1-109, gnl|xenTro1|scaffold_429 (128081-128238) | |
| 208-352, gnl|bosTau2|chr17 (12810219-12810075) | |
| 208-352, gnl|canFam2|chr19 (6315432-6315278) | |
| 208-352, gnl|danRer3|chrUn (148568751-148568900) | |
| 208-352, gnl|dasNov1|scaffold_19844 (13048-13202) | |
| 208-352, gnl|fr1|chrUn (307724291-307724136) | |
| 208-352, gnl|galGal2|chr4 (29783432-29783582) | |
| 208-352, gnl|hg17|chr4 (140663592-140663746) | |
| 208-352, gnl|Hg17|chr4 (140663593-140663737) | |
| 208-352, gnl|loxAfr1|scaffold_9403 (38686-38840) | |
| 208-352, gnl|mm7|chr3 (51594612-51594766) | |
| 208-352, gnl|Mm7|chr3 (51594613-51594757) | |
| 208-352, gnl|monDom2|scaffold_9 (6870677-6870831) | |
| 208-352, gnl|oryCun1|scaffold_213726 (41472-41626) | |
| 208-352, gnl|panTro1|chr3 (157913903-157914057) | |
| 208-352, gnl|rheMac2|chr5 (131850458-131850612) | |
| 208-352, gnl|rn3|chr2 (140315846-140316000) | |
| 208-352, gnl|tetNig1|chrUn_random (8143314-8143463) | |
| 208-352, gnl|xenTro1|scaffold_429 (129774-129923) | |
| 445-1752, gnl|bosTau2|chr17 (12808060-12806742) | |
| 445-1752, gnl|Hg17|chr4 (140666637-140667947) | |
| 445-1752, gnl|Mm7|chr3 (51597122-51598438) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| thg (0.253582) | |
| tes (0.207814) | |
| duo (0.172801) | |
| lun (0.150489) | |
| liv (0.146284) | |
| spl (0.143184) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.253582) | |
| tes (0.207814) | |
| duo (0.172801) | |
| lun (0.150489) | |
| liv (0.146284) | |
| spl (0.143184) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| nbm (0.0993246) |