Non-Coding RNA Search

Ss1.1-Pig4-TMW8002E17.5

Sequence:


               
               GAATAAGGAAGGACAAAATCACTTTTGTTTTTTAGAAACTTCATCTGGAATGAATCCCAG
TTTGAGGCTTAGGTGGTTGGTAAGTAGTTTTCAGATTCAATGAGATGGGACATATGGGGG
AAGGTTTTGTGGGAAATAGGGTATATTTGAATCTGGCCCCACTGACCTTGAGGTGCCTGT
AAGGTAACTAGTTGGGAACGTCCCGTGATAATTTCACGTATGAACCCGGAGTTCTGGAAG
GAGGTCTGAATACAAGAGACAGTTTATTGAATACTTACCAAATTTTAAGTGCTTCTCATC
TATTAGGAATTTAACTTTCAGAGCGACCTTTTGAGGTGAGAATACTTTTATTATCTTCAT
TTTATAGGCAAGGAAGCAGACACAGAGGTTAAGTAACTTGCTCCAAAGTCACACGACTAA
TATGTGGTGGAACCAGGATTCAAATGCAACAGTGTGGCTACAGATTCCAGCTTGTATCAC
CACTGTGCTCTGTGGCTTCTCATGGATGCTAAGTCAAATTAAACTAAAGGATAGATGTAA
GCATTTCACTTGTATCTGACATGTGCTCGGCTAAACGGAAGCAGTTTTCATCCACATCCT
CATCTTCATCATCTCCATCATCATCATCACTATTACAACAAGACAGAGTTTGAAGTGTGG
GGAAGGATAGGGCAACAATGAACAGGCTGAGCTAGAAAGCAGTTTAAGGTGGTTTTTCTG
GAAGCAAACATTTGAGGCAAGACCTCAGTGGATCTGCCAGGGGAGGCAGGCTTCTAGGCT
TACGTGAGATTTTAAGGGGAGACCTTGATTCTCTGAAGGTTCAACACCACTGCTTTTCGG
TATGGGAATCTAGTCCTATCTCACTAGCAGGACTGAAAAGGCAGGCAGAGAAGCAGGAGA
GATAATGTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAAGGAAGGACAAAATCACTTTTGTTTTTTAGAAACTTCATCTGGAATGAATCCCAG
TTTGAGGCTTAGGTGGTTGGTAAGTAGTTTTCAGATTCAATGAGATGGGACATATGGGGG
AAGGTTTTGTGGGAAATAGGGTATATTTGAATCTGGCCCCACTGACCTTGAGGTGCCTGT
AAGGTAACTAGTTGGGAACGTCCCGTGATAATTTCACGTATGAACCCGGAGTTCTGGAAG
GAGGTCTGAATACAAGAGACAGTTTATTGAATACTTACCAAATTTTAAGTGCTTCTCATC
TATTAGGAATTTAACTTTCAGAGCGACCTTTTGAGGTGAGAATACTTTTATTATCTTCAT
TTTATAGGCAAGGAAGCAGACACAGAGGTTAAGTAACTTGCTCCAAAGTCACACGACTAA
TATGTGGTGGAACCAGGATTCAAATGCAACAGTGTGGCTACAGATTCCAGCTTGTATCAC
CACTGTGCTCTGTGGCTTCTCATGGATGCTAAGTCAAATTAAACTAAAGGATAGATGTAA
GCATTTCACTTGTATCTGACATGTGCTCGGCTAAACGGAAGCAGTTTTCATCCACATCCT
CATCTTCATCATCTCCATCATCATCATCACTATTACAACAAGACAGAGTTTGAAGTGTGG
GGAAGGATAGGGCAACAATGAACAGGCTGAGCTAGAAAGCAGTTTAAGGTGGTTTTTCTG
GAAGCAAACATTTGAGGCAAGACCTCAGTGGATCTGCCAGGGGAGGCAGGCTTCTAGGCT
TACGTGAGATTTTAAGGGGAGACCTTGATTCTCTGAAGGTTCAACACCACTGCTTTTCGG
TATGGGAATCTAGTCCTATCTCACTAGCAGGACTGAAAAGGCAGGCAGAGAAGCAGGAGA
GATAATGTCAAA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               1-165, gnl|bosTau2|chr28 (25485019-25484856)
               

               
               1-165, gnl|canFam2|chr13 (65162468-65162676)
               

               
               1-165, gnl|echTel1|scaffold_260220 (820-620)
               

               
               1-165, gnl|hg17|chr4 (74723961-74724162)
               

               
               1-165, gnl|Hg17|chr4 (74724011-74724154)
               

               
               1-165, gnl|loxAfr1|scaffold_8318 (57386-57174)
               

               
               1-165, gnl|panTro1|chr3 (58987904-58987703)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr28 (25485019-25484856)
               

               
               1-165, gnl|canFam2|chr13 (65162468-65162676)
               

               
               1-165, gnl|echTel1|scaffold_260220 (820-620)
               

               
               1-165, gnl|hg17|chr4 (74723961-74724162)
               

               
               1-165, gnl|Hg17|chr4 (74724011-74724154)
               

               
               1-165, gnl|loxAfr1|scaffold_8318 (57386-57174)
               

               
               1-165, gnl|panTro1|chr3 (58987904-58987703)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lun (0.300978)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)

	1-165, gnl\|bosTau2\|chr28 (25485019-25484856)
	1-165, gnl\|canFam2\|chr13 (65162468-65162676)
	1-165, gnl\|echTel1\|scaffold_260220 (820-620)
	1-165, gnl\|hg17\|chr4 (74723961-74724162)
	1-165, gnl\|Hg17\|chr4 (74724011-74724154)
	1-165, gnl\|loxAfr1\|scaffold_8318 (57386-57174)
	1-165, gnl\|panTro1\|chr3 (58987904-58987703)