Non-Coding RNA Search

Ss1.1-Pig4-TMW8002E23.3

Sequence:


               
               CTCGGCCCCGCTGGTGGAGATGAGGTTCAGGCACCTTCTTCCCCTCCTGGTGAAAGTGGG
CTTTTGCTGCCAGCGGAAGCTGCCCCCAGCTTTCCCCAGGGAGGAGGACGAGGAAGAGCT
GAACCTGCCCATCAGCCCTGAGGAAGAGTGCCGGAGCTTGCTGCCCAGTGACAGTGGCCC
GGAGGAGGGGCCTGGCACTCCTCGCACTGAGGGCAGGCCCTGGGCACTCCCCAGCTCCAG
CCGCCCCCAGCGCAGCCCCAAGAGGATGGGGGTGCACCACCTGCACCGAAAGGACAGCCT
GACACAGGCCCAGGAGCAGGGCAACCTGCTCAACTAGGGCCCAGCTTGCCCTTCCTGCCA
TTGCTGCACTGGGACTGCAGGGCACTGCTGCCCTTGCAGCTCAGTCCCCACATAGCCCAA
GCCCTTGAACTCTGCTCCCTGTGTGGGTAAGGTTAGACCACACCAGGCCCTTCAGCTGCC
TTGGCTGTAACTGGTATCGGCTTGCCTCGTGGTTTTTCCCCCCTGGAATATTTATTCTCC
AAAAGTAACATACAGCTGGGGCTCAGGACCCTTTTCCAATCAGCCCATATTGGTCTGTTC
TGGGAGCTGAGGGGTTGTTAACATCAGTGTTCATTCTCCATCCTCCTTGCACATCCACCA
GGTGTGTTTTTTTTTTTCTTCCAGAGGGGGAGGGGTCATTGGGATTATTAACCTCTAATT
TTTATTTTTTACCTGTTTTCCTCTCCCCCCAAATCCTCTGCAGAGCTGTTGCCTTCAAGG
GGCCTGGCACGGCAGGCCCTGGGGATGTGGGAGAGGACTGACTCAGGGCTCCCCTCAGCT
GTTCCTCCCTCTGGAAGGGAGTAGAGGGTGGGATTCAGGGGCCTCAAGCTGGGCTCTAGG
TGAAACCTGACCCTGCTCCCAGCCTTGGCTTTAGACTGTTACTCCCAGCTTTGGGAAATT
TTCACATCGATAACTATTTTAAAATTAAAACTATTTTACTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGCCCCGCTGGTGGAGATGAGGTTCAGGCACCTTCTTCCCCTCCTGGTGAAAGTGGG
CTTTTGCTGCCAGCGGAAGCTGCCCCCAGCTTTCCCCAGGGAGGAGGACGAGGAAGAGCT
GAACCTGCCCATCAGCCCTGAGGAAGAGTGCCGGAGCTTGCTGCCCAGTGACAGTGGCCC
GGAGGAGGGGCCTGGCACTCCTCGCACTGAGGGCAGGCCCTGGGCACTCCCCAGCTCCAG
CCGCCCCCAGCGCAGCCCCAAGAGGATGGGGGTGCACCACCTGCACCGAAAGGACAGCCT
GACACAGGCCCAGGAGCAGGGCAACCTGCTCAACTAGGGCCCAGCTTGCCCTTCCTGCCA
TTGCTGCACTGGGACTGCAGGGCACTGCTGCCCTTGCAGCTCAGTCCCCACATAGCCCAA
GCCCTTGAACTCTGCTCCCTGTGTGGGTAAGGTTAGACCACACCAGGCCCTTCAGCTGCC
TTGGCTGTAACTGGTATCGGCTTGCCTCGTGGTTTTTCCCCCCTGGAATATTTATTCTCC
AAAAGTAACATACAGCTGGGGCTCAGGACCCTTTTCCAATCAGCCCATATTGGTCTGTTC
TGGGAGCTGAGGGGTTGTTAACATCAGTGTTCATTCTCCATCCTCCTTGCACATCCACCA
GGTGTGTTTTTTTTTTTCTTCCAGAGGGGGAGGGGTCATTGGGATTATTAACCTCTAATT
TTTATTTTTTACCTGTTTTCCTCTCCCCCCAAATCCTCTGCAGAGCTGTTGCCTTCAAGG
GGCCTGGCACGGCAGGCCCTGGGGATGTGGGAGAGGACTGACTCAGGGCTCCCCTCAGCT
GTTCCTCCCTCTGGAAGGGAGTAGAGGGTGGGATTCAGGGGCCTCAAGCTGGGCTCTAGG
TGAAACCTGACCCTGCTCCCAGCCTTGGCTTTAGACTGTTACTCCCAGCTTTGGGAAATT
TTCACATCGATAACTATTTTAAAATTAAAACTATTTTACTGAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               117-453, - strand, RNAz p=0.997631
               

               
               631-945, + strand, RNAz p=0.928236

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-453, - strand, RNAz p=0.997631
               

               
               631-945, + strand, RNAz p=0.928236

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               901-982, + strand, RNAmicro p=0.999271
               

               
               121-228, + strand, RNAmicro p=0.994807
               

               
               171-240, - strand, RNAmicro p=0.928935
               

               
               372-409, + strand, RNAmicro p=0.914074

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               901-982, + strand, RNAmicro p=0.999271
               

               
               121-228, + strand, RNAmicro p=0.994807
               

               
               171-240, - strand, RNAmicro p=0.928935
               

               
               372-409, + strand, RNAmicro p=0.914074

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1004, gnl|bosTau2|chr23 (17317534-17318536)
               

               
               1-1004, gnl|Hg17|chr6 (43581239-43582270)
               

               
               1-1004, gnl|Mm7|chr17 (44388140-44387279)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1004, gnl|bosTau2|chr23 (17317534-17318536)
               

               
               1-1004, gnl|Hg17|chr6 (43581239-43582270)
               

               
               1-1004, gnl|Mm7|chr17 (44388140-44387279)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               jej (0.197844)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

	117-453, - strand, RNAz p=0.997631
	631-945, + strand, RNAz p=0.928236

	901-982, + strand, RNAmicro p=0.999271
	121-228, + strand, RNAmicro p=0.994807
	171-240, - strand, RNAmicro p=0.928935
	372-409, + strand, RNAmicro p=0.914074

	1-1004, gnl\|bosTau2\|chr23 (17317534-17318536)
	1-1004, gnl\|Hg17\|chr6 (43581239-43582270)
	1-1004, gnl\|Mm7\|chr17 (44388140-44387279)