Non-Coding RNA Search

Ss1.1-Pig4-TMW8002F16.5

Sequence:


               
               ATTTTGAACATTTTTTAACATTAACACAGAACCATTAATTTTTTATAGAAGTTAACGAAA
GACTAATCTATTATTTCCTTTACTAATTTCTGAAGAAAGACTTGTATATGCTTATTTGTT
AAAACAAAACAGAACAAAAACAAAACTATTTTATATCTTAGCAAGTCATGAGATTTGCAG
AAGTGACCCAAGAAGTTGAAGTAGCAAGACCAATTGACAGGCCAATATGTGGTTTGACAC
CGGGAAGGCGATACAGAAACCAGGCCCGGGGAGGCCCTGTTGGAGACGAACCGCTGGTTT
CAGAAATGGTCTTACAAAGTTTTCCACCTTTGCCACCCTGCGAAATTTTGAATATCAACG
ATGAGCAGACGCTTCCCAGGCTGATCGAGGCTTTAGAGAAACGCCATCAGCTACGACAAA
TGATGACTGATGAGTTTAACAAACAAGCTATTACTTTTAAAGCTTTGTTGCAAGAATTTG
ACAATGCAGTTTTAAATAAAGAAAACTACATTCAAGATAGAATCTTCAGGGAAGGGTTAT
TTTAACTTGCAGTGCCCAGGGCATCATTTTATATGCCAAGAAGGCAAAGCAAAAGAAAAA
AGTGGGTATGAATTTCTTTCTCCCTTTTAAAAATGAACAGTGATGAATATACATTGGCTA
CTTTTTATTTCCCACTAGTTATTTATTTGCAAGGCATTTAACATGTGTTACAATAACTGT
ATCTTTGAGAAAATTACTTAATCCTCTATTTTTTAGCTTCCCTGTCTGTAAAATGGGGAT
TATGACTGTTCCTACCTCAGAGGGTACTGAGATAATGTGTGAAAATCATGTAGGATAGTG
AACAGCCAGCTACACAATAAGTGCTCAGTGAATGTACTTACTCTTCTTATCATCCTCATA
AAATGTGAGATAATTAGTATTTAACTCCCCCATTTTGAAACAAGTAAATGTGCTCAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGAACATTTTTTAACATTAACACAGAACCATTAATTTTTTATAGAAGTTAACGAAA
GACTAATCTATTATTTCCTTTACTAATTTCTGAAGAAAGACTTGTATATGCTTATTTGTT
AAAACAAAACAGAACAAAAACAAAACTATTTTATATCTTAGCAAGTCATGAGATTTGCAG
AAGTGACCCAAGAAGTTGAAGTAGCAAGACCAATTGACAGGCCAATATGTGGTTTGACAC
CGGGAAGGCGATACAGAAACCAGGCCCGGGGAGGCCCTGTTGGAGACGAACCGCTGGTTT
CAGAAATGGTCTTACAAAGTTTTCCACCTTTGCCACCCTGCGAAATTTTGAATATCAACG
ATGAGCAGACGCTTCCCAGGCTGATCGAGGCTTTAGAGAAACGCCATCAGCTACGACAAA
TGATGACTGATGAGTTTAACAAACAAGCTATTACTTTTAAAGCTTTGTTGCAAGAATTTG
ACAATGCAGTTTTAAATAAAGAAAACTACATTCAAGATAGAATCTTCAGGGAAGGGTTAT
TTTAACTTGCAGTGCCCAGGGCATCATTTTATATGCCAAGAAGGCAAAGCAAAAGAAAAA
AGTGGGTATGAATTTCTTTCTCCCTTTTAAAAATGAACAGTGATGAATATACATTGGCTA
CTTTTTATTTCCCACTAGTTATTTATTTGCAAGGCATTTAACATGTGTTACAATAACTGT
ATCTTTGAGAAAATTACTTAATCCTCTATTTTTTAGCTTCCCTGTCTGTAAAATGGGGAT
TATGACTGTTCCTACCTCAGAGGGTACTGAGATAATGTGTGAAAATCATGTAGGATAGTG
AACAGCCAGCTACACAATAAGTGCTCAGTGAATGTACTTACTCTTCTTATCATCCTCATA
AAATGTGAGATAATTAGTATTTAACTCCCCCATTTTGAAACAAGTAAATGTGCTCAGAAA

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-286, gnl|bosTau2|chr9 (22421667-22421398)
               

               
               1-286, gnl|Hg17|chr15 (67515240-67515652)
               

               
               1-286, gnl|Mm7|chr9 (61953852-61953612)
               


               
               288-960, gnl|bosTau2|chr9 (22421064-22420376)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-286, gnl|bosTau2|chr9 (22421667-22421398)
               

               
               1-286, gnl|Hg17|chr15 (67515240-67515652)
               

               
               1-286, gnl|Mm7|chr9 (61953852-61953612)
               


               
               288-960, gnl|bosTau2|chr9 (22421064-22420376)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	1-286, gnl\|bosTau2\|chr9 (22421667-22421398)
	1-286, gnl\|Hg17\|chr15 (67515240-67515652)
	1-286, gnl\|Mm7\|chr9 (61953852-61953612)

	288-960, gnl\|bosTau2\|chr9 (22421064-22420376)