Ss1.1-Pig4-TMW8002H16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGACCCCGGGGATCGAGCCCGGGAGCGCTAGAAGCGAAGGGTGCTGGCCACCACCCG GCCGCCCTTCCTGCCTTTGCCCCAAGAGGGCCGCCACTGCCGAAGAGGCCGCCAGCAGCG CGCATCCCGGTCACCAGCGCCGAACCCGGGTGTCCAGGGCCCGCGGCGGAGCCCAGCTGG AGCGGGTGGGACGGGGGCCAGCACCCCGAGGTCGGCGGCCGCGCCAAGCTGCCAAGATGT GAACATAAGAAAAGGACATCTAAACTAACAAAGATGCTTCTGAGCCAGAATGTCTCCGTG ATCGGACCTGTCAATTTGTATCCCATGGTGCACATCAGCCTCGTGTTTGGTATTTCTTTT ATTTTGTCTGATTCTTCAGATGAATCTTGCACTTTAAAGATGAGATTCCGGAATTCCCAG TCAATCTTATCATGGGAATTAAAAAATCATTTGGTCGTGCCAACTCACTACACATTATGG TACACGATCATGAGCAAACAAGAAAATATGAAGATGGTTGAGACTTGTGCGAATATCACA AGGTCATTTTGTGACCTAACAGATGTGTGGATAAACCTGACGGAGACGTACATTCCCAGA GTGGTTGCATTCAGAGAGAACACAGCTCTGGTCACGTGCATGGGTTCTTTCTTCATGGCA ACAGACATGTCTTTGGACCCCCCAGACTTTGAGGTTGCTGGTTTCACAGACCACATCAAT GTGAATGTGAACTTTCAGTCTGTTGTTTCCAAGACACTTAATGAGGAAGAATTACAGTTT TACTTAGTACAAGTCATCGAAAAGCCGTCGGGGGGGATCGCGAAGAAGCATAAACCCCGA ATAAAGGGAAACATCACTGAAAATTTCAATTATGTCATCGACAAGTTAATTCCAAACACA AACTACTGTGTCTCTGTCTATTTTGAGCCTAAAGACCAGAATAAAATCAATAGATCACCC TTAAAATGTACCTTCATTCAACGGGAATCAGAGTCGTCAGAATCTACCAAACTAGGCGGA ATAATTACTCTGTTTGTAATAGCTGCTGTCTTCATAAGCACCATAGTGACACTGAAACGG ATTGGTTATATATGCTTAAGAAATGATTTCCCCAAAGTTTTGACTTTTTCTAAATTGTCC GCCTGGGTATTTCCTGAGCTGCCTCCCTTGGAAAATGTGTCTACCGTGGAGATCATTCAT AATCACAGGAAGAAGAAAGAGTGGAATTATAATTATGATGATGAAAGCGACAGCGATAGC GAAGCAGCCCCCCAGAAAAACGCAGGTGGTTACACCATGCACAGGCTAAGGCCTCTCTGT CCAGCCTCCACCTCCTCGGCTACCCTGGAGGACTACTGCAGCGACCCGGACACTGAGGAC CCTGACCTGCCAGAGCCCGAGGCTGCTGCCGAAGCCCCCGAGGCCCCAGGGCCCAGCGCC TGGCAGTCGGAATACCAGAGTGGGGGCTACGAGAGGAGGGTGAGTCTGCAGCAGGACCCC TATTTCCCGGAGGACAGCAGCCCCCCAGAGGGGTCTCAGGACCGAATTGTCTTCAACGTG GACTTAAAGTCTGTGTGCGTGAGGGTCCTTGATGACGACGATGACGACTCTGACGATGAC GACGACAATGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGACCCCGGGGATCGAGCCCGGGAGCGCTAGAAGCGAAGGGTGCTGGCCACCACCCG GCCGCCCTTCCTGCCTTTGCCCCAAGAGGGCCGCCACTGCCGAAGAGGCCGCCAGCAGCG CGCATCCCGGTCACCAGCGCCGAACCCGGGTGTCCAGGGCCCGCGGCGGAGCCCAGCTGG AGCGGGTGGGACGGGGGCCAGCACCCCGAGGTCGGCGGCCGCGCCAAGCTGCCAAGATGT GAACATAAGAAAAGGACATCTAAACTAACAAAGATGCTTCTGAGCCAGAATGTCTCCGTG ATCGGACCTGTCAATTTGTATCCCATGGTGCACATCAGCCTCGTGTTTGGTATTTCTTTT ATTTTGTCTGATTCTTCAGATGAATCTTGCACTTTAAAGATGAGATTCCGGAATTCCCAG TCAATCTTATCATGGGAATTAAAAAATCATTTGGTCGTGCCAACTCACTACACATTATGG TACACGATCATGAGCAAACAAGAAAATATGAAGATGGTTGAGACTTGTGCGAATATCACA AGGTCATTTTGTGACCTAACAGATGTGTGGATAAACCTGACGGAGACGTACATTCCCAGA GTGGTTGCATTCAGAGAGAACACAGCTCTGGTCACGTGCATGGGTTCTTTCTTCATGGCA ACAGACATGTCTTTGGACCCCCCAGACTTTGAGGTTGCTGGTTTCACAGACCACATCAAT GTGAATGTGAACTTTCAGTCTGTTGTTTCCAAGACACTTAATGAGGAAGAATTACAGTTT TACTTAGTACAAGTCATCGAAAAGCCGTCGGGGGGGATCGCGAAGAAGCATAAACCCCGA ATAAAGGGAAACATCACTGAAAATTTCAATTATGTCATCGACAAGTTAATTCCAAACACA AACTACTGTGTCTCTGTCTATTTTGAGCCTAAAGACCAGAATAAAATCAATAGATCACCC TTAAAATGTACCTTCATTCAACGGGAATCAGAGTCGTCAGAATCTACCAAACTAGGCGGA ATAATTACTCTGTTTGTAATAGCTGCTGTCTTCATAAGCACCATAGTGACACTGAAACGG ATTGGTTATATATGCTTAAGAAATGATTTCCCCAAAGTTTTGACTTTTTCTAAATTGTCC GCCTGGGTATTTCCTGAGCTGCCTCCCTTGGAAAATGTGTCTACCGTGGAGATCATTCAT AATCACAGGAAGAAGAAAGAGTGGAATTATAATTATGATGATGAAAGCGACAGCGATAGC GAAGCAGCCCCCCAGAAAAACGCAGGTGGTTACACCATGCACAGGCTAAGGCCTCTCTGT CCAGCCTCCACCTCCTCGGCTACCCTGGAGGACTACTGCAGCGACCCGGACACTGAGGAC CCTGACCTGCCAGAGCCCGAGGCTGCTGCCGAAGCCCCCGAGGCCCCAGGGCCCAGCGCC TGGCAGTCGGAATACCAGAGTGGGGGCTACGAGAGGAGGGTGAGTCTGCAGCAGGACCCC TATTTCCCGGAGGACAGCAGCCCCCCAGAGGGGTCTCAGGACCGAATTGTCTTCAACGTG GACTTAAAGTCTGTGTGCGTGAGGGTCCTTGATGACGACGATGACGACTCTGACGATGAC GACGACAATGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1423-1538, - strand, RNAz p=0.995606 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1423-1538, - strand, RNAz p=0.995606 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 3-236, gnl|bosTau2|chr1 (1904943-1904710) | |
| 3-236, gnl|hg17|chr21 (33524090-33524421) | |
| 3-236, gnl|Hg17|chr21 (33524181-33524391) | |
| 3-236, gnl|loxAfr1|scaffold_101097 (4830-4531) | |
| 3-236, gnl|mm7|chr16 (91423432-91423713) | |
| 3-236, gnl|panTro1|chr22 (33497062-33497398) | |
| 3-236, gnl|rheMac2|chr3 (13327466-13327100) | |
| 375-494, gnl|bosTau2|chr1 (1888819-1888700) | |
| 375-494, gnl|canFam2|chr31 (30889600-30890145) | |
| 375-494, gnl|dasNov1|scaffold_35084 (3856-3282) | |
| 375-494, gnl|hg17|chr21 (33538699-33539314) | |
| 375-494, gnl|Hg17|chr21 (33539130-33539249) | |
| 375-494, gnl|loxAfr1|scaffold_29607 (7865-7181) | |
| 375-494, gnl|mm7|chr16 (91436163-91436821) | |
| 375-494, gnl|Mm7|chr16 (91436549-91436668) | |
| 375-494, gnl|oryCun1|scaffold_117777 (3918-3345) | |
| 375-494, gnl|panTro1|chr22 (33511697-33512312) | |
| 375-494, gnl|rheMac2|chr3 (13312522-13311897) | |
| 827-982, gnl|bosTau2|chr1 (1883233-1883078) | |
| 827-982, gnl|canFam2|chr31 (30897784-30898054) | |
| 827-982, gnl|dasNov1|scaffold_90826 (1677-1953) | |
| 827-982, gnl|echTel1|scaffold_32805 (3136-3386) | |
| 827-982, gnl|hg17|chr21 (33546767-33547030) | |
| 827-982, gnl|Hg17|chr21 (33546835-33546990) | |
| 827-982, gnl|mm7|chr16 (91444287-91444536) | |
| 827-982, gnl|Mm7|chr16 (91444358-91444501) | |
| 827-982, gnl|panTro1|chr22_random (7974771-7974508) | |
| 827-982, gnl|rheMac2|chr3 (13304353-13304085) | |
| 1122-1605, gnl|bosTau2|chr1 (1872075-1871577) | |
| 1122-1605, gnl|Hg17|chr21 (33556967-33557453) | |
| 1122-1605, gnl|Mm7|chr16 (91454312-91454804) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-236, gnl|bosTau2|chr1 (1904943-1904710) | |
| 3-236, gnl|hg17|chr21 (33524090-33524421) | |
| 3-236, gnl|Hg17|chr21 (33524181-33524391) | |
| 3-236, gnl|loxAfr1|scaffold_101097 (4830-4531) | |
| 3-236, gnl|mm7|chr16 (91423432-91423713) | |
| 3-236, gnl|panTro1|chr22 (33497062-33497398) | |
| 3-236, gnl|rheMac2|chr3 (13327466-13327100) | |
| 375-494, gnl|bosTau2|chr1 (1888819-1888700) | |
| 375-494, gnl|canFam2|chr31 (30889600-30890145) | |
| 375-494, gnl|dasNov1|scaffold_35084 (3856-3282) | |
| 375-494, gnl|hg17|chr21 (33538699-33539314) | |
| 375-494, gnl|Hg17|chr21 (33539130-33539249) | |
| 375-494, gnl|loxAfr1|scaffold_29607 (7865-7181) | |
| 375-494, gnl|mm7|chr16 (91436163-91436821) | |
| 375-494, gnl|Mm7|chr16 (91436549-91436668) | |
| 375-494, gnl|oryCun1|scaffold_117777 (3918-3345) | |
| 375-494, gnl|panTro1|chr22 (33511697-33512312) | |
| 375-494, gnl|rheMac2|chr3 (13312522-13311897) | |
| 827-982, gnl|bosTau2|chr1 (1883233-1883078) | |
| 827-982, gnl|canFam2|chr31 (30897784-30898054) | |
| 827-982, gnl|dasNov1|scaffold_90826 (1677-1953) | |
| 827-982, gnl|echTel1|scaffold_32805 (3136-3386) | |
| 827-982, gnl|hg17|chr21 (33546767-33547030) | |
| 827-982, gnl|Hg17|chr21 (33546835-33546990) | |
| 827-982, gnl|mm7|chr16 (91444287-91444536) | |
| 827-982, gnl|Mm7|chr16 (91444358-91444501) | |
| 827-982, gnl|panTro1|chr22_random (7974771-7974508) | |
| 827-982, gnl|rheMac2|chr3 (13304353-13304085) | |
| 1122-1605, gnl|bosTau2|chr1 (1872075-1871577) | |
| 1122-1605, gnl|Hg17|chr21 (33556967-33557453) | |
| 1122-1605, gnl|Mm7|chr16 (91454312-91454804) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| eru (0.120048) |