Non-Coding RNA Search

Ss1.1-Pig4-TMW8002H22.3

Sequence:


               
               GTTAAGCGGGGCACTACCGTTTGGGTGGACTCAGTCTGGGAAGTGCTTTATTTGCATACA
ACATTTTTTGATGGTTTGGTTTTCTGAAAACTCACTGAACCTTAGTAATTTGGTGGGAAG
AAGAGGTAGGAAGTAAAATACTCCTTTCTCCCTCACCCCCTCTTCCTCATGACGACCTCT
TCCACCAAGATGTGCTCCCTCATTATTTGAAAAAGTTCTAGGAAATGATTGCGTGAATAA
GTTGTCTCAATCTTTACATTTCGGAGGGCTCTGCCAAAATTCAAGGAAATTGTGAAAGTC
TTTTTTTTTTTTTTTCTGTCACGATGACCGAGACATAAAGCAGCCGTTCTCTCCATTCGA
GCAGCTGTGTGTAAGTGGAATTTCACTGAAGAACACGTCATTGGTCTTACCCGCTTTTTC
CCTTTTCCTGTATTTCCATTCTGTCCCTGTTTCGGGATGCTTAGAAACCACAAGGTGCTA
TAGATTTTTGTTTTCATTTTCTCTTAAGTTGAAGTCGTTTTCAGCTGTGTTCCCTTTGGG
GCCTGGATGGACGGCAGGGAAGGTCTGACATAGAAAGGTAATGTGTAGCCTGACTTTTTG
TCACTTTCTGAGATGAACTGTATACTTAACCAGGAAGACCAGGTGGTGTACTTTTTTTAT
TATCAGATTGGTATCCAGCTGGTATTCTTATATATTTGATTATAGTGTAGTTGCCAGCAG
GAAAACAATGTGGAAACATTTTTTTAAATACATTTAAAATGAAGGGCATTCAGCTTTTTT
TTTTTTTTAAGTGGCAAAATAAATCTCAATGTCTCAAGCCTGGATTTAGGCAACTCCATT
TATTAGGATTTTAAAATCCTATCCCTTAGCATGTTGTTTATTTGGTTTTTACTTAAATGT
TTACCTCTACTTTTGAGAATTTTCTTAACCTAGTCTTGTTTTGTAATGTCAATTTTATGA
AATATCATACCCATGTTTTCATTCTTCTACTGCTGAAACACGTATGGTATGCTCTAATTA
AATTTCAAAACATTAAAAATTATTTCAACATAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAGCGGGGCACTACCGTTTGGGTGGACTCAGTCTGGGAAGTGCTTTATTTGCATACA
ACATTTTTTGATGGTTTGGTTTTCTGAAAACTCACTGAACCTTAGTAATTTGGTGGGAAG
AAGAGGTAGGAAGTAAAATACTCCTTTCTCCCTCACCCCCTCTTCCTCATGACGACCTCT
TCCACCAAGATGTGCTCCCTCATTATTTGAAAAAGTTCTAGGAAATGATTGCGTGAATAA
GTTGTCTCAATCTTTACATTTCGGAGGGCTCTGCCAAAATTCAAGGAAATTGTGAAAGTC
TTTTTTTTTTTTTTTCTGTCACGATGACCGAGACATAAAGCAGCCGTTCTCTCCATTCGA
GCAGCTGTGTGTAAGTGGAATTTCACTGAAGAACACGTCATTGGTCTTACCCGCTTTTTC
CCTTTTCCTGTATTTCCATTCTGTCCCTGTTTCGGGATGCTTAGAAACCACAAGGTGCTA
TAGATTTTTGTTTTCATTTTCTCTTAAGTTGAAGTCGTTTTCAGCTGTGTTCCCTTTGGG
GCCTGGATGGACGGCAGGGAAGGTCTGACATAGAAAGGTAATGTGTAGCCTGACTTTTTG
TCACTTTCTGAGATGAACTGTATACTTAACCAGGAAGACCAGGTGGTGTACTTTTTTTAT
TATCAGATTGGTATCCAGCTGGTATTCTTATATATTTGATTATAGTGTAGTTGCCAGCAG
GAAAACAATGTGGAAACATTTTTTTAAATACATTTAAAATGAAGGGCATTCAGCTTTTTT
TTTTTTTTAAGTGGCAAAATAAATCTCAATGTCTCAAGCCTGGATTTAGGCAACTCCATT
TATTAGGATTTTAAAATCCTATCCCTTAGCATGTTGTTTATTTGGTTTTTACTTAAATGT
TTACCTCTACTTTTGAGAATTTTCTTAACCTAGTCTTGTTTTGTAATGTCAATTTTATGA
AATATCATACCCATGTTTTCATTCTTCTACTGCTGAAACACGTATGGTATGCTCTAATTA
AATTTCAAAACATTAAAAATTATTTCAACATAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               58-207, - strand, RNAz p=0.999889
               

               
               606-725, + strand, RNAz p=0.533362
               

               
               615-769, - strand, RNAz p=0.603064
               

               
               810-929, - strand, RNAz p=0.952785

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-207, - strand, RNAz p=0.999889
               

               
               606-725, + strand, RNAz p=0.533362
               

               
               615-769, - strand, RNAz p=0.603064
               

               
               810-929, - strand, RNAz p=0.952785

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               127-231, - strand, RNAmicro p=0.999997
               

               
               132-201, + strand, RNAmicro p=0.999785

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               127-231, - strand, RNAmicro p=0.999997
               

               
               132-201, + strand, RNAmicro p=0.999785

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               38-1052, gnl|bosTau2|chr5 (42188203-42189178)
               

               
               38-1052, gnl|canFam2|chr10 (35443197-35442538)
               

               
               38-1052, gnl|dasNov1|scaffold_268 (232862-233536)
               

               
               38-1052, gnl|echTel1|scaffold_290657 (49354-49954)
               

               
               38-1052, gnl|hg17|chr12 (105244553-105245207)
               

               
               38-1052, gnl|Hg17|chr12 (105244564-105245581)
               

               
               38-1052, gnl|loxAfr1|scaffold_30436 (15832-15180)
               

               
               38-1052, gnl|monDom2|scaffold_34 (7009141-7008449)
               

               
               38-1052, gnl|oryCun1|scaffold_172546 (16201-15588)
               

               
               38-1052, gnl|panTro1|chr10 (107756115-107756769)
               

               
               38-1052, gnl|rheMac2|chr11 (107443677-107444333)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-1052, gnl|bosTau2|chr5 (42188203-42189178)
               

               
               38-1052, gnl|canFam2|chr10 (35443197-35442538)
               

               
               38-1052, gnl|dasNov1|scaffold_268 (232862-233536)
               

               
               38-1052, gnl|echTel1|scaffold_290657 (49354-49954)
               

               
               38-1052, gnl|hg17|chr12 (105244553-105245207)
               

               
               38-1052, gnl|Hg17|chr12 (105244564-105245581)
               

               
               38-1052, gnl|loxAfr1|scaffold_30436 (15832-15180)
               

               
               38-1052, gnl|monDom2|scaffold_34 (7009141-7008449)
               

               
               38-1052, gnl|oryCun1|scaffold_172546 (16201-15588)
               

               
               38-1052, gnl|panTro1|chr10 (107756115-107756769)
               

               
               38-1052, gnl|rheMac2|chr11 (107443677-107444333)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cbl (0.45919)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	58-207, - strand, RNAz p=0.999889
	606-725, + strand, RNAz p=0.533362
	615-769, - strand, RNAz p=0.603064
	810-929, - strand, RNAz p=0.952785

	127-231, - strand, RNAmicro p=0.999997
	132-201, + strand, RNAmicro p=0.999785

	38-1052, gnl\|bosTau2\|chr5 (42188203-42189178)
	38-1052, gnl\|canFam2\|chr10 (35443197-35442538)
	38-1052, gnl\|dasNov1\|scaffold_268 (232862-233536)
	38-1052, gnl\|echTel1\|scaffold_290657 (49354-49954)
	38-1052, gnl\|hg17\|chr12 (105244553-105245207)
	38-1052, gnl\|Hg17\|chr12 (105244564-105245581)
	38-1052, gnl\|loxAfr1\|scaffold_30436 (15832-15180)
	38-1052, gnl\|monDom2\|scaffold_34 (7009141-7008449)
	38-1052, gnl\|oryCun1\|scaffold_172546 (16201-15588)
	38-1052, gnl\|panTro1\|chr10 (107756115-107756769)
	38-1052, gnl\|rheMac2\|chr11 (107443677-107444333)

	cbl (0.45919)
	sug (0.254582)
	cbe (0.239234)
	hea (0.204499)
	fhi (0.169578)
	fco (0.157208)
	ste (0.135208)
	pla (0.133672)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	ecc (0.115035)
	jca (0.11396)