Ss1.1-Pig4-TMW8002I17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATTTGACCACTATAAGTGTGACTGCAGCCGAACAGGATTCTACGGTGAAAACTGTACT ACACCTGAATTTCTGACAAGGATAAAATTATTCCTGAAGCCCACTCCAAACACAGTGCAC TACATACTTACCCACTTCAAGGGAGTCTGGAACATTGTCAATAATATTCCCTTCCTGCGG AATGCAATTATGAAATACGTATTGATATCGAGATCACATCTGATTGATAGCCCACCAACT TACAATATGCACTATGGCTATAAAAGCTGGGAAGCCTTTTCTAACCTCTCCTATTATACC AGAGCTCTTCCTCCTGTGCCTGATGACTGCCCAACACCCATGGGTGTGAAAGGGAGGAAA GAGCTTCCCGATTCAAAGGAAGTTGTGGAAAAATTACTTCTAAGAAGAAAGTTCATCCCT GATCCCCAGGGCACAAACATGATGTTTGCATTCTTTGCCCAGCACTTCACCCATCAGTTT TTCAAGACAGATCAGAAGCGAGGACCAGCTTTCACCAAAGGACAGGGCCATGGGGTGGAC TTAAGTCATGTTTATGGTGAATCTTTGGAGAGACAGCATAAACTGCGCCTTTTCAAGGAT GGAAAAATGAAGTATCAGATAATTGATGGTGAGATGTATCCTCCGACAGCCAAAGACACT CAAGTCGAGATGATCTACCCGCCTCACACTCCTGAACACCTCCGCTTTGCCGTGGGGCAT GAGGTCTTTGGTCTGGTGCCTGGTCTGATGATGTACGCCACAATCTGGCTGCGGGAACAT AATAGAGTGTGCGATGTGCTTAAACAGGAGCACCCGGAATGGGACGATGAACGGCTGTTC CAGACGAGCAGGCTGATACTGATAGGAGAAACGATTAAGATTGTGATCGAAGACTATGTA CAACACCTGAGTGGCTACCACTTCAAACTGAAGTTTGACCCAGAGCTGCTTTTCAACCAG CAATTCCAATACCAAAACCGTATTGCTGCTGAGTTTAACACACTCTACCACTGGCATCCC CTTCTGCCTGACGCCTTCCAGATTGATGGCCACGAGTACAACTATCAACAGTTTCTCTAC AATAACTCTATCTTACTGGAACATGGCATCACCCAATTTGTTGAATCATTTAGCAGGCAA ATTGCTGGCAGGGTTGCTGGTGGTAGGAATCTTCCAGCTGCAGTACAAAAAGTATCAAAG GCCTCAATCGACCAGAGCAGAGAGATGAGATACCAGTCTTTTAATGAATACCGCAAGCGC TTTCTGCTGAAGCCCTATCGATCATTTGAAGAACTTACAGGAGAGAAGGAAATGGCTGCA GAGTTAGAAGCGCTCTATGGTGACATTGATGCCATGGAGCTGTATCCTGCCCTTCTGGTA GAAAAGCCTCGCCCAGATGCCATCTTTGGGGAGACCATGGTAGAAGCTGGAGCCCCATTC TCCTTGAAAGGACTTATGGGTAATCCTATCTGTTCTCCTGAGTACTGGAAGCCTAGTACT TTTGGTGGAGAAGTAGGTTTTAAAATCATCAACACTGCCTCGATTCAGTCTCTCATCTGC AATAATGTGAAAGGCTGCCCTTTTACCTCATTCAGTGTTCAAGATCCACAGCTCGCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATTTGACCACTATAAGTGTGACTGCAGCCGAACAGGATTCTACGGTGAAAACTGTACT ACACCTGAATTTCTGACAAGGATAAAATTATTCCTGAAGCCCACTCCAAACACAGTGCAC TACATACTTACCCACTTCAAGGGAGTCTGGAACATTGTCAATAATATTCCCTTCCTGCGG AATGCAATTATGAAATACGTATTGATATCGAGATCACATCTGATTGATAGCCCACCAACT TACAATATGCACTATGGCTATAAAAGCTGGGAAGCCTTTTCTAACCTCTCCTATTATACC AGAGCTCTTCCTCCTGTGCCTGATGACTGCCCAACACCCATGGGTGTGAAAGGGAGGAAA GAGCTTCCCGATTCAAAGGAAGTTGTGGAAAAATTACTTCTAAGAAGAAAGTTCATCCCT GATCCCCAGGGCACAAACATGATGTTTGCATTCTTTGCCCAGCACTTCACCCATCAGTTT TTCAAGACAGATCAGAAGCGAGGACCAGCTTTCACCAAAGGACAGGGCCATGGGGTGGAC TTAAGTCATGTTTATGGTGAATCTTTGGAGAGACAGCATAAACTGCGCCTTTTCAAGGAT GGAAAAATGAAGTATCAGATAATTGATGGTGAGATGTATCCTCCGACAGCCAAAGACACT CAAGTCGAGATGATCTACCCGCCTCACACTCCTGAACACCTCCGCTTTGCCGTGGGGCAT GAGGTCTTTGGTCTGGTGCCTGGTCTGATGATGTACGCCACAATCTGGCTGCGGGAACAT AATAGAGTGTGCGATGTGCTTAAACAGGAGCACCCGGAATGGGACGATGAACGGCTGTTC CAGACGAGCAGGCTGATACTGATAGGAGAAACGATTAAGATTGTGATCGAAGACTATGTA CAACACCTGAGTGGCTACCACTTCAAACTGAAGTTTGACCCAGAGCTGCTTTTCAACCAG CAATTCCAATACCAAAACCGTATTGCTGCTGAGTTTAACACACTCTACCACTGGCATCCC CTTCTGCCTGACGCCTTCCAGATTGATGGCCACGAGTACAACTATCAACAGTTTCTCTAC AATAACTCTATCTTACTGGAACATGGCATCACCCAATTTGTTGAATCATTTAGCAGGCAA ATTGCTGGCAGGGTTGCTGGTGGTAGGAATCTTCCAGCTGCAGTACAAAAAGTATCAAAG GCCTCAATCGACCAGAGCAGAGAGATGAGATACCAGTCTTTTAATGAATACCGCAAGCGC TTTCTGCTGAAGCCCTATCGATCATTTGAAGAACTTACAGGAGAGAAGGAAATGGCTGCA GAGTTAGAAGCGCTCTATGGTGACATTGATGCCATGGAGCTGTATCCTGCCCTTCTGGTA GAAAAGCCTCGCCCAGATGCCATCTTTGGGGAGACCATGGTAGAAGCTGGAGCCCCATTC TCCTTGAAAGGACTTATGGGTAATCCTATCTGTTCTCCTGAGTACTGGAAGCCTAGTACT TTTGGTGGAGAAGTAGGTTTTAAAATCATCAACACTGCCTCGATTCAGTCTCTCATCTGC AATAATGTGAAAGGCTGCCCTTTTACCTCATTCAGTGTTCAAGATCCACAGCTCGCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 420-1620, - strand, RNAz p=0.889836 | |
| 902-1021, - strand, RNAz p=0.516464 | |
| 1009-1100, - strand, RNAz p=0.98602 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 420-1620, - strand, RNAz p=0.889836 | |
| 902-1021, - strand, RNAz p=0.516464 | |
| 1009-1100, - strand, RNAz p=0.98602 |
| Aligned organism(s): 101 entry(ies) | More info |
| Aligned organism(s): 101 entry(ies) | Help | Less info |
| 62-205, gnl|bosTau2|chr16 (49754543-49754400) | |
| 62-205, gnl|canFam2|chr7 (22637686-22637870) | |
| 62-205, gnl|danRer3|chr20 (42748863-42749044) | |
| 62-205, gnl|dasNov1|scaffold_95331 (8230-8045) | |
| 62-205, gnl|echTel1|scaffold_266866 (6333-6141) | |
| 62-205, gnl|fr1|chrUn (175371469-175371289) | |
| 62-205, gnl|galGal2|chr8 (9744144-9743963) | |
| 62-205, gnl|hg17|chr1 (183379836-183380027) | |
| 62-205, gnl|Hg17|chr1 (183379993-183379850) | |
| 62-205, gnl|loxAfr1|scaffold_316 (73029-73224) | |
| 62-205, gnl|mm7|chr1 (150026983-150026795) | |
| 62-205, gnl|Mm7|chr1 (150026824-150026967) | |
| 62-205, gnl|monDom2|scaffold_16 (41113351-41113542) | |
| 62-205, gnl|oryCun1|scaffold_190643 (6911-7103) | |
| 62-205, gnl|panTro1|chr1 (165958986-165959177) | |
| 62-205, gnl|rheMac2|chr1 (184028750-184028559) | |
| 62-205, gnl|rn3|chr13 (64442549-64442360) | |
| 62-205, gnl|tetNig1|chr1 (15384539-15384356) | |
| 62-205, gnl|xenTro1|scaffold_160 (1325623-1325454) | |
| 209-353, gnl|bosTau2|chr16 (49753712-49753568) | |
| 209-353, gnl|canFam2|chr7 (22637003-22637098) | |
| 209-353, gnl|danRer3|chr20 (42747545-42747640) | |
| 209-353, gnl|dasNov1|scaffold_135030 (3330-3234) | |
| 209-353, gnl|echTel1|scaffold_266866 (7016-6921) | |
| 209-353, gnl|fr1|chrUn (175371693-175371598) | |
| 209-353, gnl|galGal2|chr8 (9744743-9744648) | |
| 209-353, gnl|hg17|chr1 (183379046-183379141) | |
| 209-353, gnl|Hg17|chr1 (183379193-183379049) | |
| 209-353, gnl|loxAfr1|scaffold_316 (72029-72124) | |
| 209-353, gnl|mm7|chr1 (150027754-150027659) | |
| 209-353, gnl|Mm7|chr1 (150027605-150027749) | |
| 209-353, gnl|monDom2|scaffold_16 (41112734-41112829) | |
| 209-353, gnl|oryCun1|scaffold_163822 (7145-7051) | |
| 209-353, gnl|panTro1|chr1 (165958195-165958290) | |
| 209-353, gnl|rheMac2|chr1 (184029541-184029446) | |
| 209-353, gnl|rn3|chr13 (64443303-64443208) | |
| 209-353, gnl|tetNig1|chr1 (15384782-15384687) | |
| 209-353, gnl|xenTro1|scaffold_160 (1326070-1325975) | |
| 394-537, gnl|bosTau2|chr11 (74399218-74399075) | |
| 394-537, gnl|canFam2|chr9 (63548062-63547866) | |
| 394-537, gnl|danRer3|chr20 (42747229-42747033) | |
| 394-537, gnl|dasNov1|scaffold_124014 (3774-3578) | |
| 394-537, gnl|echTel1|scaffold_320271 (5089-4893) | |
| 394-537, gnl|fr1|chrUn (108621707-108621900) | |
| 394-537, gnl|galGal2|chr17 (1662083-1661886) | |
| 394-537, gnl|hg17|chr9 (122223201-122223397) | |
| 394-537, gnl|Hg17|chr9 (122223245-122223388) | |
| 394-537, gnl|loxAfr1|scaffold_6860 (81431-81235) | |
| 394-537, gnl|mm7|chr2 (36247904-36248106) | |
| 394-537, gnl|Mm7|chr2 (36247948-36248091) | |
| 394-537, gnl|monDom2|scaffold_38 (15548021-15548214) | |
| 394-537, gnl|oryCun1|scaffold_163822 (10005-10201) | |
| 394-537, gnl|panTro1|chr11 (106927098-106927294) | |
| 394-537, gnl|rheMac2|chr15 (13615702-13615506) | |
| 394-537, gnl|rn3|chr3 (15249575-15249771) | |
| 394-537, gnl|tetNig1|chr4 (3994922-3995113) | |
| 394-537, gnl|xenTro1|scaffold_871 (255304-255113) | |
| 863-1154, gnl|bosTau2|chr16 (49751416-49751125) | |
| 863-1154, gnl|canFam2|chr7 (22634821-22635116) | |
| 863-1154, gnl|danRer3|chr20 (42745602-42745897) | |
| 863-1154, gnl|dasNov1|scaffold_26682 (48183-47888) | |
| 863-1154, gnl|echTel1|scaffold_266866 (9269-8970) | |
| 863-1154, gnl|fr1|chrUn (175373214-175372923) | |
| 863-1154, gnl|galGal2|chr8 (9747919-9747624) | |
| 863-1154, gnl|hg17|chr1 (183376679-183376974) | |
| 863-1154, gnl|Hg17|chr1 (183376976-183376685) | |
| 863-1154, gnl|loxAfr1|scaffold_316 (69407-69702) | |
| 863-1154, gnl|mm7|chr1 (150030193-150029898) | |
| 863-1154, gnl|Mm7|chr1 (150029894-150030185) | |
| 863-1154, gnl|monDom2|scaffold_16 (41109359-41109650) | |
| 863-1154, gnl|oryCun1|scaffold_190643 (3813-4108) | |
| 863-1154, gnl|panTro1|chr1 (165955831-165956126) | |
| 863-1154, gnl|rheMac2|chr1 (184032219-184031924) | |
| 863-1154, gnl|rn3|chr13 (64445866-64445571) | |
| 863-1154, gnl|tetNig1|chr1 (15386341-15386050) | |
| 863-1154, gnl|xenTro1|scaffold_160 (1328639-1328344) | |
| 864-1100, gnl|bosTau2|chr11 (74394622-74394386) | |
| 864-1100, gnl|canFam2|chr9 (63543185-63542848) | |
| 864-1100, gnl|danRer3|chr20 (42745936-42745606) | |
| 864-1100, gnl|dasNov1|scaffold_27085 (15222-14887) | |
| 864-1100, gnl|echTel1|scaffold_320271 (1056-716) | |
| 864-1100, gnl|fr1|chrUn (108622510-108622828) | |
| 864-1100, gnl|galGal2|chr17 (1660930-1660604) | |
| 864-1100, gnl|hg17|chr9 (122228241-122228577) | |
| 864-1100, gnl|Hg17|chr9 (122228277-122228513) | |
| 864-1100, gnl|loxAfr1|scaffold_91619 (3026-2690) | |
| 864-1100, gnl|mm7|chr2 (36252318-36252653) | |
| 864-1100, gnl|Mm7|chr2 (36252353-36252589) | |
| 864-1100, gnl|monDom2|scaffold_38 (15553018-15553346) | |
| 864-1100, gnl|oryCun1|scaffold_163822 (15109-15445) | |
| 864-1100, gnl|panTro1|chr11 (106932123-106932459) | |
| 864-1100, gnl|rheMac2|chr15 (13610644-13610308) | |
| 864-1100, gnl|rn3|chr3 (15253970-15254314) | |
| 864-1100, gnl|tetNig1|chr4 (3995816-3996134) | |
| 864-1100, gnl|xenTro1|scaffold_871 (249453-249148) | |
| 1294-1620, gnl|bosTau2|chr16 (49750339-49750013) | |
| 1294-1620, gnl|Hg17|chr1 (183375558-183375232) | |
| 1294-1620, gnl|Mm7|chr1 (150030981-150031306) | |
| 1295-1610, gnl|bosTau2|chr11 (74385121-74384806) | |
| 1295-1610, gnl|Hg17|chr9 (122234016-122234331) | |
| 1295-1610, gnl|Mm7|chr2 (36258301-36258616) |
| Aligned organism(s): 101 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-205, gnl|bosTau2|chr16 (49754543-49754400) | |
| 62-205, gnl|canFam2|chr7 (22637686-22637870) | |
| 62-205, gnl|danRer3|chr20 (42748863-42749044) | |
| 62-205, gnl|dasNov1|scaffold_95331 (8230-8045) | |
| 62-205, gnl|echTel1|scaffold_266866 (6333-6141) | |
| 62-205, gnl|fr1|chrUn (175371469-175371289) | |
| 62-205, gnl|galGal2|chr8 (9744144-9743963) | |
| 62-205, gnl|hg17|chr1 (183379836-183380027) | |
| 62-205, gnl|Hg17|chr1 (183379993-183379850) | |
| 62-205, gnl|loxAfr1|scaffold_316 (73029-73224) | |
| 62-205, gnl|mm7|chr1 (150026983-150026795) | |
| 62-205, gnl|Mm7|chr1 (150026824-150026967) | |
| 62-205, gnl|monDom2|scaffold_16 (41113351-41113542) | |
| 62-205, gnl|oryCun1|scaffold_190643 (6911-7103) | |
| 62-205, gnl|panTro1|chr1 (165958986-165959177) | |
| 62-205, gnl|rheMac2|chr1 (184028750-184028559) | |
| 62-205, gnl|rn3|chr13 (64442549-64442360) | |
| 62-205, gnl|tetNig1|chr1 (15384539-15384356) | |
| 62-205, gnl|xenTro1|scaffold_160 (1325623-1325454) | |
| 209-353, gnl|bosTau2|chr16 (49753712-49753568) | |
| 209-353, gnl|canFam2|chr7 (22637003-22637098) | |
| 209-353, gnl|danRer3|chr20 (42747545-42747640) | |
| 209-353, gnl|dasNov1|scaffold_135030 (3330-3234) | |
| 209-353, gnl|echTel1|scaffold_266866 (7016-6921) | |
| 209-353, gnl|fr1|chrUn (175371693-175371598) | |
| 209-353, gnl|galGal2|chr8 (9744743-9744648) | |
| 209-353, gnl|hg17|chr1 (183379046-183379141) | |
| 209-353, gnl|Hg17|chr1 (183379193-183379049) | |
| 209-353, gnl|loxAfr1|scaffold_316 (72029-72124) | |
| 209-353, gnl|mm7|chr1 (150027754-150027659) | |
| 209-353, gnl|Mm7|chr1 (150027605-150027749) | |
| 209-353, gnl|monDom2|scaffold_16 (41112734-41112829) | |
| 209-353, gnl|oryCun1|scaffold_163822 (7145-7051) | |
| 209-353, gnl|panTro1|chr1 (165958195-165958290) | |
| 209-353, gnl|rheMac2|chr1 (184029541-184029446) | |
| 209-353, gnl|rn3|chr13 (64443303-64443208) | |
| 209-353, gnl|tetNig1|chr1 (15384782-15384687) | |
| 209-353, gnl|xenTro1|scaffold_160 (1326070-1325975) | |
| 394-537, gnl|bosTau2|chr11 (74399218-74399075) | |
| 394-537, gnl|canFam2|chr9 (63548062-63547866) | |
| 394-537, gnl|danRer3|chr20 (42747229-42747033) | |
| 394-537, gnl|dasNov1|scaffold_124014 (3774-3578) | |
| 394-537, gnl|echTel1|scaffold_320271 (5089-4893) | |
| 394-537, gnl|fr1|chrUn (108621707-108621900) | |
| 394-537, gnl|galGal2|chr17 (1662083-1661886) | |
| 394-537, gnl|hg17|chr9 (122223201-122223397) | |
| 394-537, gnl|Hg17|chr9 (122223245-122223388) | |
| 394-537, gnl|loxAfr1|scaffold_6860 (81431-81235) | |
| 394-537, gnl|mm7|chr2 (36247904-36248106) | |
| 394-537, gnl|Mm7|chr2 (36247948-36248091) | |
| 394-537, gnl|monDom2|scaffold_38 (15548021-15548214) | |
| 394-537, gnl|oryCun1|scaffold_163822 (10005-10201) | |
| 394-537, gnl|panTro1|chr11 (106927098-106927294) | |
| 394-537, gnl|rheMac2|chr15 (13615702-13615506) | |
| 394-537, gnl|rn3|chr3 (15249575-15249771) | |
| 394-537, gnl|tetNig1|chr4 (3994922-3995113) | |
| 394-537, gnl|xenTro1|scaffold_871 (255304-255113) | |
| 863-1154, gnl|bosTau2|chr16 (49751416-49751125) | |
| 863-1154, gnl|canFam2|chr7 (22634821-22635116) | |
| 863-1154, gnl|danRer3|chr20 (42745602-42745897) | |
| 863-1154, gnl|dasNov1|scaffold_26682 (48183-47888) | |
| 863-1154, gnl|echTel1|scaffold_266866 (9269-8970) | |
| 863-1154, gnl|fr1|chrUn (175373214-175372923) | |
| 863-1154, gnl|galGal2|chr8 (9747919-9747624) | |
| 863-1154, gnl|hg17|chr1 (183376679-183376974) | |
| 863-1154, gnl|Hg17|chr1 (183376976-183376685) | |
| 863-1154, gnl|loxAfr1|scaffold_316 (69407-69702) | |
| 863-1154, gnl|mm7|chr1 (150030193-150029898) | |
| 863-1154, gnl|Mm7|chr1 (150029894-150030185) | |
| 863-1154, gnl|monDom2|scaffold_16 (41109359-41109650) | |
| 863-1154, gnl|oryCun1|scaffold_190643 (3813-4108) | |
| 863-1154, gnl|panTro1|chr1 (165955831-165956126) | |
| 863-1154, gnl|rheMac2|chr1 (184032219-184031924) | |
| 863-1154, gnl|rn3|chr13 (64445866-64445571) | |
| 863-1154, gnl|tetNig1|chr1 (15386341-15386050) | |
| 863-1154, gnl|xenTro1|scaffold_160 (1328639-1328344) | |
| 864-1100, gnl|bosTau2|chr11 (74394622-74394386) | |
| 864-1100, gnl|canFam2|chr9 (63543185-63542848) | |
| 864-1100, gnl|danRer3|chr20 (42745936-42745606) | |
| 864-1100, gnl|dasNov1|scaffold_27085 (15222-14887) | |
| 864-1100, gnl|echTel1|scaffold_320271 (1056-716) | |
| 864-1100, gnl|fr1|chrUn (108622510-108622828) | |
| 864-1100, gnl|galGal2|chr17 (1660930-1660604) | |
| 864-1100, gnl|hg17|chr9 (122228241-122228577) | |
| 864-1100, gnl|Hg17|chr9 (122228277-122228513) | |
| 864-1100, gnl|loxAfr1|scaffold_91619 (3026-2690) | |
| 864-1100, gnl|mm7|chr2 (36252318-36252653) | |
| 864-1100, gnl|Mm7|chr2 (36252353-36252589) | |
| 864-1100, gnl|monDom2|scaffold_38 (15553018-15553346) | |
| 864-1100, gnl|oryCun1|scaffold_163822 (15109-15445) | |
| 864-1100, gnl|panTro1|chr11 (106932123-106932459) | |
| 864-1100, gnl|rheMac2|chr15 (13610644-13610308) | |
| 864-1100, gnl|rn3|chr3 (15253970-15254314) | |
| 864-1100, gnl|tetNig1|chr4 (3995816-3996134) | |
| 864-1100, gnl|xenTro1|scaffold_871 (249453-249148) | |
| 1294-1620, gnl|bosTau2|chr16 (49750339-49750013) | |
| 1294-1620, gnl|Hg17|chr1 (183375558-183375232) | |
| 1294-1620, gnl|Mm7|chr1 (150030981-150031306) | |
| 1295-1610, gnl|bosTau2|chr11 (74385121-74384806) | |
| 1295-1610, gnl|Hg17|chr9 (122234016-122234331) | |
| 1295-1610, gnl|Mm7|chr2 (36258301-36258616) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| pla (0.133672) |