Non-Coding RNA Search

Ss1.1-Pig4-TMW8002K07.5

Sequence:


               
               GGTGGGTTCACTTTCCAAGGCCAGATTAAAACAGTTATTTCCTATAAAAATCTGGAAGCA
AAAAATGGGAGGGGAACACTCTTAATGTGTTTTTATTAATAGAATAATGCAATAAAAATA
TAATGTCTTTTTAAAGAAAAAAAGACAATAATTGCATTTTAAGAGCTCTGCAAGATCTGT
TCTTGTCATAGCCATTGACTATATACATTTGTTACTAGTGATTCAATTTTTAATTTTTTA
GTCACAGGAAATTTTTAACTCTTCTGTAGATGCATGTCCACACATTTTTTTTTTCATTTT
TTTGTCCATGCATTTTCTGTGATGTGGAAATCCCTTCTTTTTTTTTTTTTTTTTTTGCAA
ATGGTGGTACTTGCAATCTGTTTTATAATTAGTACTCCATTTTAATCTTAATTTATAATT
TTTATTTTAAGCAACAAATGAAACTAAGATGGCCAGTTTTAAGATTGTGTTGCTGTAACA
AAAAATGTAAGAAGATTTAGGAAAGCCTCTTGATTTCGTTTGGCCTCACATTGCCTTGGT
AAAGTAAAAGGAAATAGTAAGAATGGAGCTAGGAAACCAAAGCAAGTTTGTGAAACTGGC
ACAGTGATAGAGAATTGCTGTGGAAAGTTGTAGAGCAAAGGGGTGGGTCCTTGAGGCCTA
CCAGTGTGTAAAGGTGTTCAAATAAAGGGCTGTTCCTACAGGTAACATTAAATGTGAACT
CAACACTTCAGAGTCTTTAAAGGGTTTCTAAGTGCATCAGTGTAATAGTGTTTTACCACC
AGCTGCCTTTGTTCCTCGTTAGTGTAACAAATATTTGATAGAGGTTTAATAATTTTGTCT
GTTCAGACCATTAATTTTGTTTTTGTTCTGTCTGTGTAATCAAATAAAATTTGAGTAACA
TGCAATGGTAAGCATTAATGCATGGTTATTTGGACCAGAAAAAAGTGCCATAGAAGACCA
ATAACTGTTTTTAGTCGAGGCTAGTTTGGAGCCTTTCATTGGAGCAATATTCAGTTACTG
CGATTCATTTTTAATTACTAAGAAATATAATTTTGGAATTTTTAATCTGTTACGCTTTGT
TCTTCAACCTTGTTTTAATTAAGACTTTTATAGGACTAGCAAAAACAGCAATCTGTATTA
TTTTTGCAAAAGTGAGTTGGACTCGTTTGTCTCTTGCTAGTCAGAGTAAATAGGCAGTAC
TTTTAAAAAGATGTGAACTCCAATACTGCACTTCTTTCAAGATGTTATCAATTGGTTATT
GTACTGTATAGTTTTAATAATATTGATTGAAACCCTTTAACAACTCTTTGTAAATTTTAA
CTCATTTTAGTTGATTTTCAGTACTTATTTACATAGGAATTGATTTTTATGGATATAGTA
GAAGAAATGTGCTGTATTTTGATAAAATTCATTTATTGTATGTGTGCTGTAATCTCTTTA
AAAAAAAAGAATGACAAACAGCTTCTTTAACACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGTTCACTTTCCAAGGCCAGATTAAAACAGTTATTTCCTATAAAAATCTGGAAGCA
AAAAATGGGAGGGGAACACTCTTAATGTGTTTTTATTAATAGAATAATGCAATAAAAATA
TAATGTCTTTTTAAAGAAAAAAAGACAATAATTGCATTTTAAGAGCTCTGCAAGATCTGT
TCTTGTCATAGCCATTGACTATATACATTTGTTACTAGTGATTCAATTTTTAATTTTTTA
GTCACAGGAAATTTTTAACTCTTCTGTAGATGCATGTCCACACATTTTTTTTTTCATTTT
TTTGTCCATGCATTTTCTGTGATGTGGAAATCCCTTCTTTTTTTTTTTTTTTTTTTGCAA
ATGGTGGTACTTGCAATCTGTTTTATAATTAGTACTCCATTTTAATCTTAATTTATAATT
TTTATTTTAAGCAACAAATGAAACTAAGATGGCCAGTTTTAAGATTGTGTTGCTGTAACA
AAAAATGTAAGAAGATTTAGGAAAGCCTCTTGATTTCGTTTGGCCTCACATTGCCTTGGT
AAAGTAAAAGGAAATAGTAAGAATGGAGCTAGGAAACCAAAGCAAGTTTGTGAAACTGGC
ACAGTGATAGAGAATTGCTGTGGAAAGTTGTAGAGCAAAGGGGTGGGTCCTTGAGGCCTA
CCAGTGTGTAAAGGTGTTCAAATAAAGGGCTGTTCCTACAGGTAACATTAAATGTGAACT
CAACACTTCAGAGTCTTTAAAGGGTTTCTAAGTGCATCAGTGTAATAGTGTTTTACCACC
AGCTGCCTTTGTTCCTCGTTAGTGTAACAAATATTTGATAGAGGTTTAATAATTTTGTCT
GTTCAGACCATTAATTTTGTTTTTGTTCTGTCTGTGTAATCAAATAAAATTTGAGTAACA
TGCAATGGTAAGCATTAATGCATGGTTATTTGGACCAGAAAAAAGTGCCATAGAAGACCA
ATAACTGTTTTTAGTCGAGGCTAGTTTGGAGCCTTTCATTGGAGCAATATTCAGTTACTG
CGATTCATTTTTAATTACTAAGAAATATAATTTTGGAATTTTTAATCTGTTACGCTTTGT
TCTTCAACCTTGTTTTAATTAAGACTTTTATAGGACTAGCAAAAACAGCAATCTGTATTA
TTTTTGCAAAAGTGAGTTGGACTCGTTTGTCTCTTGCTAGTCAGAGTAAATAGGCAGTAC
TTTTAAAAAGATGTGAACTCCAATACTGCACTTCTTTCAAGATGTTATCAATTGGTTATT
GTACTGTATAGTTTTAATAATATTGATTGAAACCCTTTAACAACTCTTTGTAAATTTTAA
CTCATTTTAGTTGATTTTCAGTACTTATTTACATAGGAATTGATTTTTATGGATATAGTA
GAAGAAATGTGCTGTATTTTGATAAAATTCATTTATTGTATGTGTGCTGTAATCTCTTTA
AAAAAAAAGAATGACAAACAGCTTCTTTAACACAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               229-343, - strand, RNAz p=0.981889
               

               
               572-690, - strand, RNAz p=0.750538

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-343, - strand, RNAz p=0.981889
               

               
               572-690, - strand, RNAz p=0.750538

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1475, gnl|bosTau2|chr20 (8381393-8379936)
               

               
               1-1475, gnl|Hg17|chr5 (65410640-65412100)
               

               
               1-1475, gnl|Mm7|chr13 (100958084-100956673)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1475, gnl|bosTau2|chr20 (8381393-8379936)
               

               
               1-1475, gnl|Hg17|chr5 (65410640-65412100)
               

               
               1-1475, gnl|Mm7|chr13 (100958084-100956673)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               sug (0.636456)
               

               
               tra (0.61546)
               

               
               liv (0.585137)
               

               
               lnt (0.569233)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               cbl (0.344392)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.636456)
               

               
               tra (0.61546)
               

               
               liv (0.585137)
               

               
               lnt (0.569233)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               cbl (0.344392)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	229-343, - strand, RNAz p=0.981889
	572-690, - strand, RNAz p=0.750538

	1-1475, gnl\|bosTau2\|chr20 (8381393-8379936)
	1-1475, gnl\|Hg17\|chr5 (65410640-65412100)
	1-1475, gnl\|Mm7\|chr13 (100958084-100956673)

	sug (0.636456)
	tra (0.61546)
	liv (0.585137)
	lnt (0.569233)
	ret (0.514933)
	pro (0.512033)
	kid (0.389206)
	bla (0.373042)
	sag (0.36543)
	mgm (0.360685)
	rec (0.346141)
	cbl (0.344392)
	fco (0.314416)
	sme (0.305437)
	hyp (0.285673)
	lyg (0.266205)
	thg (0.253582)
	mgp (0.230681)
	fcc (0.197785)
	fbs (0.175346)
	tbr (0.154178)
	fat (0.147427)
	lin (0.145603)
	csk (0.140746)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)