Ss1.1-Pig4-TMW8002N12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTCCTTAAAACCATCCAAGATGGAGATTCTGATGAACTCACAATAAAGAGATTTATTG AAGGAAAAGAGAAACCAGGAGCCCTCTGGCACATATATGCTGCTAAAGACACAGAGAAGA TAAGAGAATTTCTTAAAAAGGTATCAGAGGAGCAAGGTCAGGAAAACCCTGCAGATCACG ATCCCATTCATGATCAGAGCTGGTATTTAGACCGATCATTAAGAAAGCGTCTTCATCAAG AGTATGGAGTTCAAGGCTGGGCTATTGTGCAGTTTCTTGGAGATGTGGTATTTATCCCAG CAGGAGCTCCACATCAGGTTCATAACTTATATAGTTGTATCAAAGTGGCTGAAGATTTCG TTTCTCCAGAGCATGTTAAACACTGCTTCTGGCTCACTCAGGAATTCCGCTATCTGTCAC AGACTCATACGAATCATGAAGATAAATTACAGGTGAAGAATGTTATCTACCACGCAGTGA AAGATGCGGTTGCTATGCTGAAAGCCAGTGAATCCAGTTTTGGCAAACCCTAGGGGTCCC AGAGGCGCATAACCCCCCTGCACATTGGAAGTGAATTACTGGCAGCTGTTCAAACTCTTC AGGCAGGATTCCTGTGGACTTTGAGATTCATGTTACCTCATCTTCTTTTTTAAACTGTAC CCACCTGGTAAGGGTACTCTGTCTAATGTATATTTCTAGTGTTTACAGACACTAAATGTG TATATGTAGTAACTATTTACAGAACATGCATCCTTAAACTGTGACTGCTCACCCAGTGCA GAGCTTCTACCAAGCCGTAAAAACGAAACCTCTTATCAGCTCTGGAAACCACCTGCAGTT GTTCCCCGGCTGTTTGATCTGACAGCTTCGTCAGATGGGTTATAACGATTAGGAATCACT GCGCAGTTTATTTGGGTTGCGTTTTGTTGTGTGTCTGTCTGCGTACCCTCTCCCCCACCC CTTAGGGTTCAGAAGAGCAGTGGAGGAAACGACCGCCAGCAAAGCAGTGCTTACTGTATA GCATTAGGACTGGCATTATATAGCAGAAATCAACTACTGTGCAATTCTTGGGGTTAACCA TCTTTAGTCAAATGGAGTTTTAATTTAAATGAAGCTTTGCTAATTTTAAGTGTTAAGCAT TTTGCATTAAAGTATTCATATAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTCCTTAAAACCATCCAAGATGGAGATTCTGATGAACTCACAATAAAGAGATTTATTG AAGGAAAAGAGAAACCAGGAGCCCTCTGGCACATATATGCTGCTAAAGACACAGAGAAGA TAAGAGAATTTCTTAAAAAGGTATCAGAGGAGCAAGGTCAGGAAAACCCTGCAGATCACG ATCCCATTCATGATCAGAGCTGGTATTTAGACCGATCATTAAGAAAGCGTCTTCATCAAG AGTATGGAGTTCAAGGCTGGGCTATTGTGCAGTTTCTTGGAGATGTGGTATTTATCCCAG CAGGAGCTCCACATCAGGTTCATAACTTATATAGTTGTATCAAAGTGGCTGAAGATTTCG TTTCTCCAGAGCATGTTAAACACTGCTTCTGGCTCACTCAGGAATTCCGCTATCTGTCAC AGACTCATACGAATCATGAAGATAAATTACAGGTGAAGAATGTTATCTACCACGCAGTGA AAGATGCGGTTGCTATGCTGAAAGCCAGTGAATCCAGTTTTGGCAAACCCTAGGGGTCCC AGAGGCGCATAACCCCCCTGCACATTGGAAGTGAATTACTGGCAGCTGTTCAAACTCTTC AGGCAGGATTCCTGTGGACTTTGAGATTCATGTTACCTCATCTTCTTTTTTAAACTGTAC CCACCTGGTAAGGGTACTCTGTCTAATGTATATTTCTAGTGTTTACAGACACTAAATGTG TATATGTAGTAACTATTTACAGAACATGCATCCTTAAACTGTGACTGCTCACCCAGTGCA GAGCTTCTACCAAGCCGTAAAAACGAAACCTCTTATCAGCTCTGGAAACCACCTGCAGTT GTTCCCCGGCTGTTTGATCTGACAGCTTCGTCAGATGGGTTATAACGATTAGGAATCACT GCGCAGTTTATTTGGGTTGCGTTTTGTTGTGTGTCTGTCTGCGTACCCTCTCCCCCACCC CTTAGGGTTCAGAAGAGCAGTGGAGGAAACGACCGCCAGCAAAGCAGTGCTTACTGTATA GCATTAGGACTGGCATTATATAGCAGAAATCAACTACTGTGCAATTCTTGGGGTTAACCA TCTTTAGTCAAATGGAGTTTTAATTTAAATGAAGCTTTGCTAATTTTAAGTGTTAAGCAT TTTGCATTAAAGTATTCATATAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 129-247, - strand, RNAz p=0.748208 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 129-247, - strand, RNAz p=0.748208 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 129-319, gnl|bosTau2|chr7 (34912129-34912319) | |
| 129-319, gnl|Hg17|chr5 (137793831-137794015) | |
| 129-319, gnl|Mm7|chr18 (35209406-35209590) | |
| 139-318, gnl|bosTau2|chr11 (35218854-35219033) | |
| 139-318, gnl|canFam2|chr17 (41757992-41757776) | |
| 139-318, gnl|danRer3|chrNA (164414203-164414399) | |
| 139-318, gnl|dasNov1|scaffold_9396 (21289-21094) | |
| 139-318, gnl|echTel1|scaffold_188499 (17028-17227) | |
| 139-318, gnl|fr1|chrUn (114140515-114140299) | |
| 139-318, gnl|galGal2|chr4 (85696043-85696228) | |
| 139-318, gnl|hg17|chr2 (86629626-86629842) | |
| 139-318, gnl|Hg17|chr2 (86629660-86629839) | |
| 139-318, gnl|loxAfr1|scaffold_10551 (12716-12500) | |
| 139-318, gnl|mm7|chr6 (71608802-71608587) | |
| 139-318, gnl|Mm7|chr6 (71608767-71608588) | |
| 139-318, gnl|monDom2|scaffold_63 (790408-790603) | |
| 139-318, gnl|oryCun1|scaffold_172931 (43607-43823) | |
| 139-318, gnl|panTro1|chr12 (89511750-89511966) | |
| 139-318, gnl|rheMac2|chr13 (87068305-87068519) | |
| 139-318, gnl|rn3|chr4 (105112948-105112733) | |
| 139-318, gnl|tetNig1|chr1 (968659-968840) | |
| 139-318, gnl|xenTro1|scaffold_149 (661604-661819) | |
| 450-1163, gnl|bosTau2|chr11 (35220116-35220833) | |
| 450-1163, gnl|Hg17|chr2 (86630817-86631495) | |
| 450-1163, gnl|Mm7|chr6 (71607649-71606974) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-319, gnl|bosTau2|chr7 (34912129-34912319) | |
| 129-319, gnl|Hg17|chr5 (137793831-137794015) | |
| 129-319, gnl|Mm7|chr18 (35209406-35209590) | |
| 139-318, gnl|bosTau2|chr11 (35218854-35219033) | |
| 139-318, gnl|canFam2|chr17 (41757992-41757776) | |
| 139-318, gnl|danRer3|chrNA (164414203-164414399) | |
| 139-318, gnl|dasNov1|scaffold_9396 (21289-21094) | |
| 139-318, gnl|echTel1|scaffold_188499 (17028-17227) | |
| 139-318, gnl|fr1|chrUn (114140515-114140299) | |
| 139-318, gnl|galGal2|chr4 (85696043-85696228) | |
| 139-318, gnl|hg17|chr2 (86629626-86629842) | |
| 139-318, gnl|Hg17|chr2 (86629660-86629839) | |
| 139-318, gnl|loxAfr1|scaffold_10551 (12716-12500) | |
| 139-318, gnl|mm7|chr6 (71608802-71608587) | |
| 139-318, gnl|Mm7|chr6 (71608767-71608588) | |
| 139-318, gnl|monDom2|scaffold_63 (790408-790603) | |
| 139-318, gnl|oryCun1|scaffold_172931 (43607-43823) | |
| 139-318, gnl|panTro1|chr12 (89511750-89511966) | |
| 139-318, gnl|rheMac2|chr13 (87068305-87068519) | |
| 139-318, gnl|rn3|chr4 (105112948-105112733) | |
| 139-318, gnl|tetNig1|chr1 (968659-968840) | |
| 139-318, gnl|xenTro1|scaffold_149 (661604-661819) | |
| 450-1163, gnl|bosTau2|chr11 (35220116-35220833) | |
| 450-1163, gnl|Hg17|chr2 (86630817-86631495) | |
| 450-1163, gnl|Mm7|chr6 (71607649-71606974) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| pro (0.512033) | |
| cmu (0.372787) | |
| csk (0.281492) | |
| sug (0.254582) | |
| bla (0.248694) | |
| med (0.232504) | |
| nep (0.183925) | |
| sag (0.182715) | |
| rec (0.17307) | |
| cli (0.152812) | |
| ski (0.146735) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| cmu (0.372787) | |
| csk (0.281492) | |
| sug (0.254582) | |
| bla (0.248694) | |
| med (0.232504) | |
| nep (0.183925) | |
| sag (0.182715) | |
| rec (0.17307) | |
| cli (0.152812) | |
| ski (0.146735) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |