Non-Coding RNA Search

Ss1.1-Pig4-TMW8002P12.3

Sequence:


               
               GCGCTGACCGTGGCCCAGCCTGTCCTGTCTGTGCACATTGCCATCGCTCGGAACACAGAT
GCCCAGGCTGTGCTGAAGGCAGCCAGTGCCTGCCTGCAGGGGAAGTTCCACTTCCACACT
GTGACCATCCAGATCGAGGACTACTCTGAGGACATGAAGGACTGTCAGTCATGCCAGGGG
CCCTCGGCCTGACCGCCTGGCCAGGCACCACCTGGAGCATGGACAGGCCTGCAGATGGCC
GGACAGAGTGTCCCCCAGGCTGAGCCAGGACTCCGCCTAGCCTGACTCTGTTATAAATCG
GGTGCCTCTCCTGATCGCCACTCCACGTTCAGGGTGGAGGAGCCTTGTCCCGCTCCAGGA
ATGGGCTCTTCCTCTGCCTCCCATAACTGCCTACAGCCAGCCCCAGGATGGGAACTCGGC
AGGTGTAGAACTAGTGTGACCCGGCACCCTCAGCTCCTGGCAGGGCAGAGTCTGGGCCGC
ATCCTCAGCCCATGCTGGCCTACCAGCAGCCTCTGGAAAGGCAGTGAAGCATAGTGAGGG
GTCAGTGTCCCCTCACCTACCCACCTCATTTCCCATTTTCAGTCTGTCTGGCCTTTTGCC
TTGGGAACCTGTAAGGAAGCTCTGGAACAAAGCCCCTTCCCTGTGCCTCTAGCAATACGG
TTTAACGAGGCCAGTGGGGGGTTGGGGAGCTGGGAGGACCCTGCACAGCTATACAGGTCA
CCCCCGCCCACCCCTGTCCCCGAGATGAGGAGCCAGAGGGCATCTAAGGCTGACCTGTGC
CTTAGTCACTTCAGCTGTGAGCTAAATCTTTCTTTTCCTGGACGGAGGGGGCTTCCAAGT
TTGTAAGGACCTGCTGGTCCTCTTGCCTCATTCCCCCAGTCCAGGAAGCTCTGCCAACAC
CAAGGTGACAGGATGAGTGGGGGTGGGCAGAGATTTCAGCTTAGGTCCCGATTTAACAGC
TGCACAGCCCCCGAGGCCACTTCTCTTGCCCAGATAGTGGCCGGGGGTGGGGGGTGGGGG
TCAAGGAGTCTGACATCCAATATGGTTAGACCATCTCTGTTGCTAGTACGGCCTAGCCTG
CTCAGAACTTGAGGATGGAGGACAAAGAGGGTACGACCAGGACAGGAGGCCCTGGCTTCC
TGGGGTGCGTGTGAAGATTCCTGAATTAGGGGATGGCTTGTATTTACAAGATGGTGAAGG
TGGGGGTAACCTGCCCCCCGTCTCACAGAGGAGGCAGCACGCCCAGTCATCGGGTGGCCC
TGATCTAGTGGTCTCTGCCCTCAGGCAAGTCAGAGCTGCTCTCTGAGAACTGAGAACCTT
GACACCTACCTCACAGGGTTGTTGTGAGGGCTGGAGCCAAAGTCCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTGACCGTGGCCCAGCCTGTCCTGTCTGTGCACATTGCCATCGCTCGGAACACAGAT
GCCCAGGCTGTGCTGAAGGCAGCCAGTGCCTGCCTGCAGGGGAAGTTCCACTTCCACACT
GTGACCATCCAGATCGAGGACTACTCTGAGGACATGAAGGACTGTCAGTCATGCCAGGGG
CCCTCGGCCTGACCGCCTGGCCAGGCACCACCTGGAGCATGGACAGGCCTGCAGATGGCC
GGACAGAGTGTCCCCCAGGCTGAGCCAGGACTCCGCCTAGCCTGACTCTGTTATAAATCG
GGTGCCTCTCCTGATCGCCACTCCACGTTCAGGGTGGAGGAGCCTTGTCCCGCTCCAGGA
ATGGGCTCTTCCTCTGCCTCCCATAACTGCCTACAGCCAGCCCCAGGATGGGAACTCGGC
AGGTGTAGAACTAGTGTGACCCGGCACCCTCAGCTCCTGGCAGGGCAGAGTCTGGGCCGC
ATCCTCAGCCCATGCTGGCCTACCAGCAGCCTCTGGAAAGGCAGTGAAGCATAGTGAGGG
GTCAGTGTCCCCTCACCTACCCACCTCATTTCCCATTTTCAGTCTGTCTGGCCTTTTGCC
TTGGGAACCTGTAAGGAAGCTCTGGAACAAAGCCCCTTCCCTGTGCCTCTAGCAATACGG
TTTAACGAGGCCAGTGGGGGGTTGGGGAGCTGGGAGGACCCTGCACAGCTATACAGGTCA
CCCCCGCCCACCCCTGTCCCCGAGATGAGGAGCCAGAGGGCATCTAAGGCTGACCTGTGC
CTTAGTCACTTCAGCTGTGAGCTAAATCTTTCTTTTCCTGGACGGAGGGGGCTTCCAAGT
TTGTAAGGACCTGCTGGTCCTCTTGCCTCATTCCCCCAGTCCAGGAAGCTCTGCCAACAC
CAAGGTGACAGGATGAGTGGGGGTGGGCAGAGATTTCAGCTTAGGTCCCGATTTAACAGC
TGCACAGCCCCCGAGGCCACTTCTCTTGCCCAGATAGTGGCCGGGGGTGGGGGGTGGGGG
TCAAGGAGTCTGACATCCAATATGGTTAGACCATCTCTGTTGCTAGTACGGCCTAGCCTG
CTCAGAACTTGAGGATGGAGGACAAAGAGGGTACGACCAGGACAGGAGGCCCTGGCTTCC
TGGGGTGCGTGTGAAGATTCCTGAATTAGGGGATGGCTTGTATTTACAAGATGGTGAAGG
TGGGGGTAACCTGCCCCCCGTCTCACAGAGGAGGCAGCACGCCCAGTCATCGGGTGGCCC
TGATCTAGTGGTCTCTGCCCTCAGGCAAGTCAGAGCTGCTCTCTGAGAACTGAGAACCTT
GACACCTACCTCACAGGGTTGTTGTGAGGGCTGGAGCCAAAGTCCGCT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               205-431, - strand, RNAz p=0.978349
               

               
               541-639, - strand, RNAz p=0.93198
               

               
               738-868, + strand, RNAz p=0.91935
               

               
               816-907, - strand, RNAz p=0.551997

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-431, - strand, RNAz p=0.978349
               

               
               541-639, - strand, RNAz p=0.93198
               

               
               738-868, + strand, RNAz p=0.91935
               

               
               816-907, - strand, RNAz p=0.551997

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_032513, +
               

               
               5' of NM_032513, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032513, +
               

               
               5' of NM_032513, -

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               46-678, gnl|bosTau2|chr2 (79787997-79788653)
               

               
               46-678, gnl|Hg17|chr1 (26049939-26049343)
               


               
               738-1142, gnl|bosTau2|chr2 (79788655-79789059)
               

               
               738-1142, gnl|canFam2|chr2 (76821237-76820786)
               

               
               738-1142, gnl|dasNov1|scaffold_7230 (16271-16667)
               

               
               738-1142, gnl|echTel1|scaffold_226351 (6176-6576)
               

               
               738-1142, gnl|hg17|chr1 (26048863-26049321)
               

               
               738-1142, gnl|Hg17|chr1 (26049341-26048903)
               

               
               738-1142, gnl|loxAfr1|scaffold_25351 (9807-9338)
               

               
               738-1142, gnl|mm7|chr4 (133732525-133732140)
               

               
               738-1142, gnl|Mm7|chr4 (133732138-133732496)
               

               
               738-1142, gnl|oryCun1|scaffold_170604 (14780-15139)
               

               
               738-1142, gnl|panTro1|chr1 (26733749-26734207)
               

               
               738-1142, gnl|rheMac2|chr1 (28652374-28652830)
               

               
               738-1142, gnl|rn3|chr5 (153108243-153107865)
               


               
               1158-1363, gnl|bosTau2|chr2 (79789054-79789265)
               

               
               1158-1363, gnl|Hg17|chr1 (26048908-26048665)
               

               
               1158-1363, gnl|Mm7|chr4 (133732491-133732721)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-678, gnl|bosTau2|chr2 (79787997-79788653)
               

               
               46-678, gnl|Hg17|chr1 (26049939-26049343)
               


               
               738-1142, gnl|bosTau2|chr2 (79788655-79789059)
               

               
               738-1142, gnl|canFam2|chr2 (76821237-76820786)
               

               
               738-1142, gnl|dasNov1|scaffold_7230 (16271-16667)
               

               
               738-1142, gnl|echTel1|scaffold_226351 (6176-6576)
               

               
               738-1142, gnl|hg17|chr1 (26048863-26049321)
               

               
               738-1142, gnl|Hg17|chr1 (26049341-26048903)
               

               
               738-1142, gnl|loxAfr1|scaffold_25351 (9807-9338)
               

               
               738-1142, gnl|mm7|chr4 (133732525-133732140)
               

               
               738-1142, gnl|Mm7|chr4 (133732138-133732496)
               

               
               738-1142, gnl|oryCun1|scaffold_170604 (14780-15139)
               

               
               738-1142, gnl|panTro1|chr1 (26733749-26734207)
               

               
               738-1142, gnl|rheMac2|chr1 (28652374-28652830)
               

               
               738-1142, gnl|rn3|chr5 (153108243-153107865)
               


               
               1158-1363, gnl|bosTau2|chr2 (79789054-79789265)
               

               
               1158-1363, gnl|Hg17|chr1 (26048908-26048665)
               

               
               1158-1363, gnl|Mm7|chr4 (133732491-133732721)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               amn (0.417711)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)

	205-431, - strand, RNAz p=0.978349
	541-639, - strand, RNAz p=0.93198
	738-868, + strand, RNAz p=0.91935
	816-907, - strand, RNAz p=0.551997

	46-678, gnl\|bosTau2\|chr2 (79787997-79788653)
	46-678, gnl\|Hg17\|chr1 (26049939-26049343)

	738-1142, gnl\|bosTau2\|chr2 (79788655-79789059)
	738-1142, gnl\|canFam2\|chr2 (76821237-76820786)
	738-1142, gnl\|dasNov1\|scaffold_7230 (16271-16667)
	738-1142, gnl\|echTel1\|scaffold_226351 (6176-6576)
	738-1142, gnl\|hg17\|chr1 (26048863-26049321)
	738-1142, gnl\|Hg17\|chr1 (26049341-26048903)
	738-1142, gnl\|loxAfr1\|scaffold_25351 (9807-9338)
	738-1142, gnl\|mm7\|chr4 (133732525-133732140)
	738-1142, gnl\|Mm7\|chr4 (133732138-133732496)
	738-1142, gnl\|oryCun1\|scaffold_170604 (14780-15139)
	738-1142, gnl\|panTro1\|chr1 (26733749-26734207)
	738-1142, gnl\|rheMac2\|chr1 (28652374-28652830)
	738-1142, gnl\|rn3\|chr5 (153108243-153107865)

	1158-1363, gnl\|bosTau2\|chr2 (79789054-79789265)
	1158-1363, gnl\|Hg17\|chr1 (26048908-26048665)
	1158-1363, gnl\|Mm7\|chr4 (133732491-133732721)