Non-Coding RNA Search

Ss1.1-Pig4-TMW8002P16.5

Sequence:


               
               ACACATAGAAAGTGGAGAAAGTCTGTTGGTCACTTCACCTGCCTTAGGTGGTGTCGCCAT
CCTCCCAGTTGCTGAAAGATGAAACAAGCATCCAGAGTCCTTGCCTAACCCGCTACCTGT
GAACTGAATTTGGCCTTGGTCACCCTGAAGCCATGCACCTCAAGGTCCTGATTTTATCTC
GGCATAGGGCTGAGCCACGTAAGAGCTCAGATTCGTCATGAAGTCAGCGTTAACAATGTA
ACACATAAGCTGTGCAGTAACCAGTGCTTTAATAAGTACAGGTTGGCCAATGGTCTGATA
ATGAATTGCTGTGAGCAGTGTGGACAGTACTTGGCCAGCAAAGGTGCTGGAAACATCCTC
GTCGTTGAAGATCAGCAGATGAGATTCTGCTGCCCAAGTTGTGTTAATGAGTATAAACAG
ATAATGGAAACACACTCAAAGAAAATATTAGCATCAGAAAAGAGAAAAAGGAGTGCCAAT
AGAGAAGAAAATGAAAGAAAATTGGATGGCTCATCAGATGTACTTTTGAAAGACATAGAG
AAAATACCAGAGAAGAAGGAAAAGACTTCAGAGCTACAGATCTCAGCA------------
------------------------------------CCTTTGTCAGCCATGGCTGGTCAG
TGTCAAGAGCAGCTGGAAGAGCAGCAATCGGAAGACTCCATCATACCACCTGTGCTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACATAGAAAGTGGAGAAAGTCTGTTGGTCACTTCACCTGCCTTAGGTGGTGTCGCCAT
CCTCCCAGTTGCTGAAAGATGAAACAAGCATCCAGAGTCCTTGCCTAACCCGCTACCTGT
GAACTGAATTTGGCCTTGGTCACCCTGAAGCCATGCACCTCAAGGTCCTGATTTTATCTC
GGCATAGGGCTGAGCCACGTAAGAGCTCAGATTCGTCATGAAGTCAGCGTTAACAATGTA
ACACATAAGCTGTGCAGTAACCAGTGCTTTAATAAGTACAGGTTGGCCAATGGTCTGATA
ATGAATTGCTGTGAGCAGTGTGGACAGTACTTGGCCAGCAAAGGTGCTGGAAACATCCTC
GTCGTTGAAGATCAGCAGATGAGATTCTGCTGCCCAAGTTGTGTTAATGAGTATAAACAG
ATAATGGAAACACACTCAAAGAAAATATTAGCATCAGAAAAGAGAAAAAGGAGTGCCAAT
AGAGAAGAAAATGAAAGAAAATTGGATGGCTCATCAGATGTACTTTTGAAAGACATAGAG
AAAATACCAGAGAAGAAGGAAAAGACTTCAGAGCTACAGATCTCAGCA------------
------------------------------------CCTTTGTCAGCCATGGCTGGTCAG
TGTCAAGAGCAGCTGGAAGAGCAGCAATCGGAAGACTCCATCATACCACCTGTGCTTTCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               291-425, - strand, RNAz p=0.947776
               

               
               309-425, + strand, RNAz p=0.751817

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               291-425, - strand, RNAz p=0.947776
               

               
               309-425, + strand, RNAz p=0.751817

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC036372, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC036372, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               207-425, gnl|bosTau2|chr12 (20667984-20668205)
               

               
               207-425, gnl|canFam2|chr25 (21101364-21101115)
               

               
               207-425, gnl|danRer3|chrUn (117012239-117012484)
               

               
               207-425, gnl|dasNov1|scaffold_143536 (1980-2231)
               

               
               207-425, gnl|echTel1|scaffold_294830 (69085-68834)
               

               
               207-425, gnl|fr1|chrUn (272281486-272281241)
               

               
               207-425, gnl|galGal2|chr1 (171047707-171047458)
               

               
               207-425, gnl|hg17|chr13 (19478490-19478740)
               

               
               207-425, gnl|Hg17|chr13 (19478510-19478731)
               

               
               207-425, gnl|loxAfr1|scaffold_58648 (2071-2321)
               

               
               207-425, gnl|mm7|chr14 (51781651-51781901)
               

               
               207-425, gnl|Mm7|chr14 (51781671-51781892)
               

               
               207-425, gnl|monDom2|scaffold_15 (27631225-27631474)
               

               
               207-425, gnl|oryCun1|scaffold_94918 (10263-10018)
               

               
               207-425, gnl|panTro1|chr14 (18363645-18363896)
               

               
               207-425, gnl|rheMac2|chr17 (1495308-1495058)
               

               
               207-425, gnl|rn3|chr15 (35947809-35948052)
               

               
               207-425, gnl|tetNig1|chr2 (17727666-17727439)
               

               
               207-425, gnl|xenTro1|scaffold_327 (834518-834767)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-425, gnl|bosTau2|chr12 (20667984-20668205)
               

               
               207-425, gnl|canFam2|chr25 (21101364-21101115)
               

               
               207-425, gnl|danRer3|chrUn (117012239-117012484)
               

               
               207-425, gnl|dasNov1|scaffold_143536 (1980-2231)
               

               
               207-425, gnl|echTel1|scaffold_294830 (69085-68834)
               

               
               207-425, gnl|fr1|chrUn (272281486-272281241)
               

               
               207-425, gnl|galGal2|chr1 (171047707-171047458)
               

               
               207-425, gnl|hg17|chr13 (19478490-19478740)
               

               
               207-425, gnl|Hg17|chr13 (19478510-19478731)
               

               
               207-425, gnl|loxAfr1|scaffold_58648 (2071-2321)
               

               
               207-425, gnl|mm7|chr14 (51781651-51781901)
               

               
               207-425, gnl|Mm7|chr14 (51781671-51781892)
               

               
               207-425, gnl|monDom2|scaffold_15 (27631225-27631474)
               

               
               207-425, gnl|oryCun1|scaffold_94918 (10263-10018)
               

               
               207-425, gnl|panTro1|chr14 (18363645-18363896)
               

               
               207-425, gnl|rheMac2|chr17 (1495308-1495058)
               

               
               207-425, gnl|rn3|chr15 (35947809-35948052)
               

               
               207-425, gnl|tetNig1|chr2 (17727666-17727439)
               

               
               207-425, gnl|xenTro1|scaffold_327 (834518-834767)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	291-425, - strand, RNAz p=0.947776
	309-425, + strand, RNAz p=0.751817

	207-425, gnl\|bosTau2\|chr12 (20667984-20668205)
	207-425, gnl\|canFam2\|chr25 (21101364-21101115)
	207-425, gnl\|danRer3\|chrUn (117012239-117012484)
	207-425, gnl\|dasNov1\|scaffold_143536 (1980-2231)
	207-425, gnl\|echTel1\|scaffold_294830 (69085-68834)
	207-425, gnl\|fr1\|chrUn (272281486-272281241)
	207-425, gnl\|galGal2\|chr1 (171047707-171047458)
	207-425, gnl\|hg17\|chr13 (19478490-19478740)
	207-425, gnl\|Hg17\|chr13 (19478510-19478731)
	207-425, gnl\|loxAfr1\|scaffold_58648 (2071-2321)
	207-425, gnl\|mm7\|chr14 (51781651-51781901)
	207-425, gnl\|Mm7\|chr14 (51781671-51781892)
	207-425, gnl\|monDom2\|scaffold_15 (27631225-27631474)
	207-425, gnl\|oryCun1\|scaffold_94918 (10263-10018)
	207-425, gnl\|panTro1\|chr14 (18363645-18363896)
	207-425, gnl\|rheMac2\|chr17 (1495308-1495058)
	207-425, gnl\|rn3\|chr15 (35947809-35948052)
	207-425, gnl\|tetNig1\|chr2 (17727666-17727439)
	207-425, gnl\|xenTro1\|scaffold_327 (834518-834767)