Non-Coding RNA Search

Ss1.1-Pig4-TMW8002P23.5

Sequence:


               
               AAAAATCTACACTGGATATACAAGGGGTTCGGACTTCAGATCAATGTAATGCATTTTTTT
GGAATTGATTTTTAAACCACCTTGCCGTTTGCAAACCCTACTCCATAGCCATATCTAGAG
CGACCCCTCGCTTTGCTAAGAGCAAGCTGTACTTCACTTTTCTCCCTGTCTCCTGTCAAT
GGCAACTGTGCCAATGGCTGAGGTGCGCTGTAGTGGGTGGCATAGGGAAGGAAGGAGAGA
TGCCATCAGGTCGCAGCTGTGCCCTCCCCTCCCTGAGCGCGCGGGTGCTGCAGCAAGCCC
GCTCTGCGGGCCAAACGCTGCCTCTCGGTGCAGAGCGCCCGCTGGGCCGAGGAGGCCGTG
CATCACTGGGTGCAGGTGGACGGGGGGACTGCGGAGAGGTGACCCTGGGCCCCTAGCAGC
AGACCCCGCCTCCCTGTAGTAGTCTGTCTGCTCTGTGGTGTGCTGAGTAGGAATGAAACC
CACCGGCCCTTTTAGTCGTGTCTGTTATGAATACTTTCGTGTAACTGCTGGTAAGCCAGG
ACTACTTTAACTTGTCTTTTGTGGGACAGATGTAACTGATTTGAAACACAGGCAGGAGAG
GCCAGGATGGGGGCTGGTGTGGCACCTGCAAGTCCAGTTAGGAGATTTTCATTCACCCTC
TTCGTAAGACAGCTATGTCTCAGCCTGACTCTTGACATTAAAGTGTATGTTTACAACATC
GCCAGTTAGATAAACGACGTGTGTGAGACAATTAAATAGAGAAAAGACATTGACGGGCAT
TCTCTTCCATGTCATTTGAATGTGGTGTTTCTGGGGGACATGTCAAGTTTCACTGTTTTT
TTAGATCAAAAAATAAATGACAAACAGTGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATCTACACTGGATATACAAGGGGTTCGGACTTCAGATCAATGTAATGCATTTTTTT
GGAATTGATTTTTAAACCACCTTGCCGTTTGCAAACCCTACTCCATAGCCATATCTAGAG
CGACCCCTCGCTTTGCTAAGAGCAAGCTGTACTTCACTTTTCTCCCTGTCTCCTGTCAAT
GGCAACTGTGCCAATGGCTGAGGTGCGCTGTAGTGGGTGGCATAGGGAAGGAAGGAGAGA
TGCCATCAGGTCGCAGCTGTGCCCTCCCCTCCCTGAGCGCGCGGGTGCTGCAGCAAGCCC
GCTCTGCGGGCCAAACGCTGCCTCTCGGTGCAGAGCGCCCGCTGGGCCGAGGAGGCCGTG
CATCACTGGGTGCAGGTGGACGGGGGGACTGCGGAGAGGTGACCCTGGGCCCCTAGCAGC
AGACCCCGCCTCCCTGTAGTAGTCTGTCTGCTCTGTGGTGTGCTGAGTAGGAATGAAACC
CACCGGCCCTTTTAGTCGTGTCTGTTATGAATACTTTCGTGTAACTGCTGGTAAGCCAGG
ACTACTTTAACTTGTCTTTTGTGGGACAGATGTAACTGATTTGAAACACAGGCAGGAGAG
GCCAGGATGGGGGCTGGTGTGGCACCTGCAAGTCCAGTTAGGAGATTTTCATTCACCCTC
TTCGTAAGACAGCTATGTCTCAGCCTGACTCTTGACATTAAAGTGTATGTTTACAACATC
GCCAGTTAGATAAACGACGTGTGTGAGACAATTAAATAGAGAAAAGACATTGACGGGCAT
TCTCTTCCATGTCATTTGAATGTGGTGTTTCTGGGGGACATGTCAAGTTTCACTGTTTTT
TTAGATCAAAAAATAAATGACAAACAGTGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-511, gnl|bosTau2|chr6 (61019461-61018907)
               

               
               1-511, gnl|Hg17|chr4 (4537514-4538076)
               


               
               519-870, gnl|bosTau2|chr6 (61018835-61018477)
               

               
               519-870, gnl|Hg17|chr4 (4538138-4538487)
               

               
               519-870, gnl|Mm7|chr5 (37219306-37218950)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-511, gnl|bosTau2|chr6 (61019461-61018907)
               

               
               1-511, gnl|Hg17|chr4 (4537514-4538076)
               


               
               519-870, gnl|bosTau2|chr6 (61018835-61018477)
               

               
               519-870, gnl|Hg17|chr4 (4538138-4538487)
               

               
               519-870, gnl|Mm7|chr5 (37219306-37218950)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               cbe (0.956938)
               

               
               ece (0.917221)
               

               
               fhi (0.847889)
               

               
               fcc (0.593354)
               

               
               ecc (0.575175)
               

               
               hyp (0.571347)
               

               
               spc (0.453463)
               

               
               nmm (0.398406)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               ece (0.917221)
               

               
               fhi (0.847889)
               

               
               fcc (0.593354)
               

               
               ecc (0.575175)
               

               
               hyp (0.571347)
               

               
               spc (0.453463)
               

               
               nmm (0.398406)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1-511, gnl\|bosTau2\|chr6 (61019461-61018907)
	1-511, gnl\|Hg17\|chr4 (4537514-4538076)

	519-870, gnl\|bosTau2\|chr6 (61018835-61018477)
	519-870, gnl\|Hg17\|chr4 (4538138-4538487)
	519-870, gnl\|Mm7\|chr5 (37219306-37218950)

	cbe (0.956938)
	ece (0.917221)
	fhi (0.847889)
	fcc (0.593354)
	ecc (0.575175)
	hyp (0.571347)
	spc (0.453463)
	nmm (0.398406)
	fce (0.271592)
	pgl (0.236967)
	ebs (0.236602)
	fbs (0.175346)
	eye (0.170503)
	cag (0.151194)
	jca (0.11396)
	eje (0.0988338)