Non-Coding RNA Search

Ss1.1-Pig4-TMW8003B18.5

Sequence:


               
               TCGCGCCGGAACCGGGAGGGCCCACGTAACTCACCTCTGACCTTTCAATACTGCCGGCGC
CATTTTGGAGGCTGGCAAATAGATTAAAAATGTACAGTAAGTCTTTTAAAGGGAAGTGGG
GATATGATAACATATCGTACTCACAGATTAACGTGGTTAAATGAGATTTCCCAGACGTTT
CCCCGAAAAGTTTCGTTTTTGTTAAGCTCAGTCAGCCATAGCAAGTATGGGCAGCCCTGG
AAGTAATTCTCCTTTAAATTCCGGAAGTAGTGCCCTGAAGTTTTAATGGTCTGTGATACC
ATAGCAACTAAGCCCCAATAGGAAACAGCCACAATGCCAATTGCTGGGCCCGCCTTCCGA
CCTCCGGAGAGCACCCGGAGGGGGCGGAGATGCAGGCAGAGTAGGTGCCGTCCCAGTGAC
GTGGTGACCGTTGGGACTTTGAGCGCTCGAGAGGAAGACCTCAAGAGGCCGAGGAAAATT
TGCAATCTGGCTATTAAGCGAGCAGGAGCCAGAACCTCAGAGAAGGAGTAGAGGTCGCCT
TGTGAATGTGAGCTGGAACCGTCCAGTTCATGCCCCTGAGCTGGGGTATTTGGGCTGGAG
TAACTGATTTCTGAATATGCATCTTATGTAACAGACATTAAGCACCTACTATGCTAGGTG
GTATTCAAACTAAATTTGGATTCTGTATTTAAATTGAATAAAACACGCTTTTAGCCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGCCGGAACCGGGAGGGCCCACGTAACTCACCTCTGACCTTTCAATACTGCCGGCGC
CATTTTGGAGGCTGGCAAATAGATTAAAAATGTACAGTAAGTCTTTTAAAGGGAAGTGGG
GATATGATAACATATCGTACTCACAGATTAACGTGGTTAAATGAGATTTCCCAGACGTTT
CCCCGAAAAGTTTCGTTTTTGTTAAGCTCAGTCAGCCATAGCAAGTATGGGCAGCCCTGG
AAGTAATTCTCCTTTAAATTCCGGAAGTAGTGCCCTGAAGTTTTAATGGTCTGTGATACC
ATAGCAACTAAGCCCCAATAGGAAACAGCCACAATGCCAATTGCTGGGCCCGCCTTCCGA
CCTCCGGAGAGCACCCGGAGGGGGCGGAGATGCAGGCAGAGTAGGTGCCGTCCCAGTGAC
GTGGTGACCGTTGGGACTTTGAGCGCTCGAGAGGAAGACCTCAAGAGGCCGAGGAAAATT
TGCAATCTGGCTATTAAGCGAGCAGGAGCCAGAACCTCAGAGAAGGAGTAGAGGTCGCCT
TGTGAATGTGAGCTGGAACCGTCCAGTTCATGCCCCTGAGCTGGGGTATTTGGGCTGGAG
TAACTGATTTCTGAATATGCATCTTATGTAACAGACATTAAGCACCTACTATGCTAGGTG
GTATTCAAACTAAATTTGGATTCTGTATTTAAATTGAATAAAACACGCTTTTAGCCCTAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-366, gnl|bosTau2|chr10 (56795997-56796385)
               

               
               1-366, gnl|Hg17|chr14 (74713071-74713458)
               

               
               1-366, gnl|Mm7|chr12 (83374270-83374649)
               


               
               404-702, gnl|bosTau2|chr10 (56796398-56796696)
               

               
               404-702, gnl|Hg17|chr14 (74713487-74713833)
               

               
               404-702, gnl|Mm7|chr12 (83374662-83374952)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-366, gnl|bosTau2|chr10 (56795997-56796385)
               

               
               1-366, gnl|Hg17|chr14 (74713071-74713458)
               

               
               1-366, gnl|Mm7|chr12 (83374270-83374649)
               


               
               404-702, gnl|bosTau2|chr10 (56796398-56796696)
               

               
               404-702, gnl|Hg17|chr14 (74713487-74713833)
               

               
               404-702, gnl|Mm7|chr12 (83374662-83374952)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-366, gnl\|bosTau2\|chr10 (56795997-56796385)
	1-366, gnl\|Hg17\|chr14 (74713071-74713458)
	1-366, gnl\|Mm7\|chr12 (83374270-83374649)

	404-702, gnl\|bosTau2\|chr10 (56796398-56796696)
	404-702, gnl\|Hg17\|chr14 (74713487-74713833)
	404-702, gnl\|Mm7\|chr12 (83374662-83374952)