Ss1.1-Pig4-TMW8003B19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCACCACCCGGATCGCACCGCCAGCCGAGAGCTGCTCCTGCTCGCTCAGTCCCCATCCG GCCCCGGTTGCCCCCAGAAATGCCGGTCGACTTTACCGGGTACTGGAAGATGCTGGCCAA CGAGAATTTCGAGGAGTATCTGCGTGCGCTGGATGTCAATGTGGCCTTGCGCAAAATTGC CAACTTGCTGAAGCCAGACAAAGAGATCGTGCAGGACGGCAACCACATGATCATCCGCAC GCTGAGCACTTTTAGGAACTACATCATGGACTTCGAGGTTGGAAAGGAGTTTGAGGAGGA TCTGACCGGCATAGACGACCGCAAGTGCATGACCACAGTGAGCTGGGATGGGGACAAGCT CGAGTGTGTGCAGAAGGGTGAGAAGGAGGGACGTGGCTGGACCCAGTGGATTGAAGGTGA CGAGCTGCACCTGGAGATGAGAGTGCAGGGCGTGGTCTGCAAGCAAGTGTTCAAAAAGGT GAACTGAAGCCTGAGCAGACCTCAGTCTCAAGGAATGAGTGACATGGATGAAGGGGCCAG GGTCCCCCCTCTCTGCACAGCATGGGGCAGAGATGTCCAGCCACCCCTCTCTGTTAGCAG AATCTGTCACTTGCCCTTTTCTTCAAACAAAGCCATCCTAATAAAAGTGGTCTCTGCTCA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCACCACCCGGATCGCACCGCCAGCCGAGAGCTGCTCCTGCTCGCTCAGTCCCCATCCG GCCCCGGTTGCCCCCAGAAATGCCGGTCGACTTTACCGGGTACTGGAAGATGCTGGCCAA CGAGAATTTCGAGGAGTATCTGCGTGCGCTGGATGTCAATGTGGCCTTGCGCAAAATTGC CAACTTGCTGAAGCCAGACAAAGAGATCGTGCAGGACGGCAACCACATGATCATCCGCAC GCTGAGCACTTTTAGGAACTACATCATGGACTTCGAGGTTGGAAAGGAGTTTGAGGAGGA TCTGACCGGCATAGACGACCGCAAGTGCATGACCACAGTGAGCTGGGATGGGGACAAGCT CGAGTGTGTGCAGAAGGGTGAGAAGGAGGGACGTGGCTGGACCCAGTGGATTGAAGGTGA CGAGCTGCACCTGGAGATGAGAGTGCAGGGCGTGGTCTGCAAGCAAGTGTTCAAAAAGGT GAACTGAAGCCTGAGCAGACCTCAGTCTCAAGGAATGAGTGACATGGATGAAGGGGCCAG GGTCCCCCCTCTCTGCACAGCATGGGGCAGAGATGTCCAGCCACCCCTCTCTGTTAGCAG AATCTGTCACTTGCCCTTTTCTTCAAACAAAGCCATCCTAATAAAAGTGGTCTCTGCTCA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 131-250, - strand, RNAz p=0.757146 | |
| 411-671, - strand, RNAz p=0.998124 | |
| 482-579, - strand, RNAz p=0.707302 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 131-250, - strand, RNAz p=0.757146 | |
| 411-671, - strand, RNAz p=0.998124 | |
| 482-579, - strand, RNAz p=0.707302 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002899, - |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 12-671, gnl|bosTau2|chr3 (56962479-56961804) | |
| 152-331, gnl|bosTau2|chr1 (81220367-81220188) | |
| 152-331, gnl|canFam2|chr23 (38752320-38752517) | |
| 152-331, gnl|danRer3|chr2 (29690637-29690828) | |
| 152-331, gnl|echTel1|scaffold_275612 (3813-3621) | |
| 152-331, gnl|fr1|chrUn (74786302-74786492) | |
| 152-331, gnl|galGal2|chr9 (7697212-7697022) | |
| 152-331, gnl|hg17|chr3 (140740313-140740510) | |
| 152-331, gnl|Hg17|chr3 (140740500-140740321) | |
| 152-331, gnl|loxAfr1|scaffold_128880 (348-151) | |
| 152-331, gnl|mm7|chr9 (98067206-98067009) | |
| 152-331, gnl|Mm7|chr9 (98067017-98067196) | |
| 152-331, gnl|monDom2|scaffold_24 (35159072-35159269) | |
| 152-331, gnl|panTro1|chr2 (143263668-143263865) | |
| 152-331, gnl|rheMac2|chr2 (148281887-148281690) | |
| 152-331, gnl|rn3|chr8 (103626064-103625867) | |
| 152-331, gnl|tetNig1|chr15 (4184991-4184794) | |
| 152-331, gnl|xenTro1|scaffold_108 (1057305-1057115) | |
| 433-658, gnl|bosTau2|chr1 (81194061-81193823) | |
| 433-658, gnl|canFam2|chr23 (38732124-38732369) | |
| 433-658, gnl|echTel1|scaffold_322121 (3966-3728) | |
| 433-658, gnl|hg17|chr3 (140718922-140719162) | |
| 433-658, gnl|Hg17|chr3 (140719221-140718983) | |
| 433-658, gnl|mm7|chr9 (98088181-98087923) | |
| 433-658, gnl|Mm7|chr9 (98087860-98088112) | |
| 433-658, gnl|monDom2|scaffold_24 (35114903-35115155) | |
| 433-658, gnl|oryCun1|scaffold_194732 (11140-10885) | |
| 433-658, gnl|panTro1|chr2 (143242394-143242634) | |
| 433-658, gnl|rheMac2|chr2 (148303197-148302953) | |
| 433-658, gnl|rn3|chr8 (103646903-103646661) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-671, gnl|bosTau2|chr3 (56962479-56961804) | |
| 152-331, gnl|bosTau2|chr1 (81220367-81220188) | |
| 152-331, gnl|canFam2|chr23 (38752320-38752517) | |
| 152-331, gnl|danRer3|chr2 (29690637-29690828) | |
| 152-331, gnl|echTel1|scaffold_275612 (3813-3621) | |
| 152-331, gnl|fr1|chrUn (74786302-74786492) | |
| 152-331, gnl|galGal2|chr9 (7697212-7697022) | |
| 152-331, gnl|hg17|chr3 (140740313-140740510) | |
| 152-331, gnl|Hg17|chr3 (140740500-140740321) | |
| 152-331, gnl|loxAfr1|scaffold_128880 (348-151) | |
| 152-331, gnl|mm7|chr9 (98067206-98067009) | |
| 152-331, gnl|Mm7|chr9 (98067017-98067196) | |
| 152-331, gnl|monDom2|scaffold_24 (35159072-35159269) | |
| 152-331, gnl|panTro1|chr2 (143263668-143263865) | |
| 152-331, gnl|rheMac2|chr2 (148281887-148281690) | |
| 152-331, gnl|rn3|chr8 (103626064-103625867) | |
| 152-331, gnl|tetNig1|chr15 (4184991-4184794) | |
| 152-331, gnl|xenTro1|scaffold_108 (1057305-1057115) | |
| 433-658, gnl|bosTau2|chr1 (81194061-81193823) | |
| 433-658, gnl|canFam2|chr23 (38732124-38732369) | |
| 433-658, gnl|echTel1|scaffold_322121 (3966-3728) | |
| 433-658, gnl|hg17|chr3 (140718922-140719162) | |
| 433-658, gnl|Hg17|chr3 (140719221-140718983) | |
| 433-658, gnl|mm7|chr9 (98088181-98087923) | |
| 433-658, gnl|Mm7|chr9 (98087860-98088112) | |
| 433-658, gnl|monDom2|scaffold_24 (35114903-35115155) | |
| 433-658, gnl|oryCun1|scaffold_194732 (11140-10885) | |
| 433-658, gnl|panTro1|chr2 (143242394-143242634) | |
| 433-658, gnl|rheMac2|chr2 (148303197-148302953) | |
| 433-658, gnl|rn3|chr8 (103646903-103646661) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eye (0.341006) | |
| col (0.195008) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| cov (0.132153) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.341006) | |
| col (0.195008) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| cov (0.132153) |