Non-Coding RNA Search

Ss1.1-Pig4-TMW8003C03.5

Sequence:


               
               GGGGACTACAGCCTCATCCCTAAAACCTCCCCCTATAGCACGATCCCTGCCCATTCTTCT
AGGCCCCTTAGCTGCCTGGAGCTCCCAGCTGAAGGCACAGAAGGGTCTGGATCCCGGAGT
CGGCTTAGTCTGCCCCCTAAAGAACCTCAGCTCCCTGACCCCCTTGCGCCTCCCCAGCGC
CGATCATATGCATTTGAAACACAGGCTAACTCTGGGAAAGGGAAGGGACTGTGATTAGGA
CCAGACCACAGGGCAAAGAGGACAGTAGTTGTCTTGAAACTCCGTGGTTTCTGAAGCTGT
CTCTTCTGCAGCCTGAGTAGCTGTAGTGCCCAACCCTATAGGTTTTGGCCCTCCAGTTTC
TCTTTGACTGTGAGAGGCACTATCTCTGTTTACTTGAGCTTGTCTCAGACACAAAGCACT
TATCCCTTAGGAGATTCCAGAAAGAGTCACCAAGATCCTGTTCCCAGAGAGTGGGGTCAT
TGGCCAAAGGGAACAAAGAGTAGGTGGAAAAACTTACAGGTTTCTCAAAGTGAAGAATGA
CGGGGGAACTCCAGCCAAGTTCCTGCCATCCTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGACTACAGCCTCATCCCTAAAACCTCCCCCTATAGCACGATCCCTGCCCATTCTTCT
AGGCCCCTTAGCTGCCTGGAGCTCCCAGCTGAAGGCACAGAAGGGTCTGGATCCCGGAGT
CGGCTTAGTCTGCCCCCTAAAGAACCTCAGCTCCCTGACCCCCTTGCGCCTCCCCAGCGC
CGATCATATGCATTTGAAACACAGGCTAACTCTGGGAAAGGGAAGGGACTGTGATTAGGA
CCAGACCACAGGGCAAAGAGGACAGTAGTTGTCTTGAAACTCCGTGGTTTCTGAAGCTGT
CTCTTCTGCAGCCTGAGTAGCTGTAGTGCCCAACCCTATAGGTTTTGGCCCTCCAGTTTC
TCTTTGACTGTGAGAGGCACTATCTCTGTTTACTTGAGCTTGTCTCAGACACAAAGCACT
TATCCCTTAGGAGATTCCAGAAAGAGTCACCAAGATCCTGTTCCCAGAGAGTGGGGTCAT
TGGCCAAAGGGAACAAAGAGTAGGTGGAAAAACTTACAGGTTTCTCAAAGTGAAGAATGA
CGGGGGAACTCCAGCCAAGTTCCTGCCATCCTCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-389, + strand, RNAz p=0.92367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-389, + strand, RNAz p=0.92367

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_181720, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_181720, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr3 (7747763-7748332)
               

               
               1-576, gnl|Hg17|chr1 (157830811-157830240)
               

               
               1-576, gnl|Mm7|chr1 (171379201-171379762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr3 (7747763-7748332)
               

               
               1-576, gnl|Hg17|chr1 (157830811-157830240)
               

               
               1-576, gnl|Mm7|chr1 (171379201-171379762)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.351679)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)

	1-576, gnl\|bosTau2\|chr3 (7747763-7748332)
	1-576, gnl\|Hg17\|chr1 (157830811-157830240)
	1-576, gnl\|Mm7\|chr1 (171379201-171379762)