Non-Coding RNA Search

Ss1.1-Pig4-TMW8003C14.3

Sequence:


               
               CAAGAATCAGGTGAGGTTAAACTCAGACCTGAAGCTAGAAAACGACTTCTAAGCTATATA
AATGAAGAACCCCAAGATGCTAATGGTTATTTCAACCTTGGAATGCTTGCCATGGATGAC
AGAAAGGATACGGAGGCAGAGATGTGGATGAAGAAAGCCATAAAATTACAAGCCGACTTC
AGAAGCGCTTTGTTCAATCTGGCACTACTGTATTCTCAGACTGCAAAGGAATTAATGGCT
TTGCCAGTTTTGGAAGAGTTACTCAGATACTATCCTGATCATATCAAGGGTCTCATTTTA
AAAGGAGACATTCTGATGAATCAAAAGAAAGATATACTTGGAGCAAAAAAATGTTTTGAA
AAGATTTTGGAGATGGATCCAAGCAATGTGCAAGGAAAACACAATCTTTGTGTTGTTTAT
TTTGAAGAGAAGGATTTATTAAAAGCTGAGAGATGCCTGGTTGAAACATTGGCATTAGCA
CCACATGAAGAGTATATTCAGCGCCATTTGAACATAGTCAGGGATAAAATTTCTTCATCT
AGTTTTGTAGAGCAACCAATATTCCCAGCTGGTAAGACTTCAGGTGTAGAAGGAGACAAA
ATTCCAACTGAAAATATGAAAGAAATCAAAAATGAACCCAGAGCCACAGAGATGATAAAA
ACAAGTGATAATAAAAGTCAGTCTAAATCCAACAAACAATTAGGAAAAAATACAGAAAAA
GAAACCCCTCACAAAACAACAAAAGATATCAAGGAAATTGAGAAGAAAAGAGTTGCTGCT
TTAAAAAGACTAGAAGAGATTGAACGTATCTTAAATGGTGAATAGCATTACTCTTTATCA
TGTGGCAGTGGTTTCAGAGAACTTCAGTCTCTGTCATGTGGTTACTTATACTGGGAGCTT
TGAAAATAGCAAGGACACTTAGAGTCTGTCATAAGCTGCCTCTACGTAGGATCAAAATAA
GATTTGCATTAAAAACCCTTTCATTACCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAATCAGGTGAGGTTAAACTCAGACCTGAAGCTAGAAAACGACTTCTAAGCTATATA
AATGAAGAACCCCAAGATGCTAATGGTTATTTCAACCTTGGAATGCTTGCCATGGATGAC
AGAAAGGATACGGAGGCAGAGATGTGGATGAAGAAAGCCATAAAATTACAAGCCGACTTC
AGAAGCGCTTTGTTCAATCTGGCACTACTGTATTCTCAGACTGCAAAGGAATTAATGGCT
TTGCCAGTTTTGGAAGAGTTACTCAGATACTATCCTGATCATATCAAGGGTCTCATTTTA
AAAGGAGACATTCTGATGAATCAAAAGAAAGATATACTTGGAGCAAAAAAATGTTTTGAA
AAGATTTTGGAGATGGATCCAAGCAATGTGCAAGGAAAACACAATCTTTGTGTTGTTTAT
TTTGAAGAGAAGGATTTATTAAAAGCTGAGAGATGCCTGGTTGAAACATTGGCATTAGCA
CCACATGAAGAGTATATTCAGCGCCATTTGAACATAGTCAGGGATAAAATTTCTTCATCT
AGTTTTGTAGAGCAACCAATATTCCCAGCTGGTAAGACTTCAGGTGTAGAAGGAGACAAA
ATTCCAACTGAAAATATGAAAGAAATCAAAAATGAACCCAGAGCCACAGAGATGATAAAA
ACAAGTGATAATAAAAGTCAGTCTAAATCCAACAAACAATTAGGAAAAAATACAGAAAAA
GAAACCCCTCACAAAACAACAAAAGATATCAAGGAAATTGAGAAGAAAAGAGTTGCTGCT
TTAAAAAGACTAGAAGAGATTGAACGTATCTTAAATGGTGAATAGCATTACTCTTTATCA
TGTGGCAGTGGTTTCAGAGAACTTCAGTCTCTGTCATGTGGTTACTTATACTGGGAGCTT
TGAAAATAGCAAGGACACTTAGAGTCTGTCATAAGCTGCCTCTACGTAGGATCAAAATAA
GATTTGCATTAAAAACCCTTTCATTACCCCCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47220553|emb|CAG05579.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47220553|emb|CAG05579.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               448-567, - strand, RNAz p=0.729418

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-567, - strand, RNAz p=0.729418

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-990, gnl|bosTau2|chr10 (47436821-47437801)
               

               
               9-990, gnl|Hg17|chr12 (87091081-87092059)
               

               
               9-990, gnl|Mm7|chr10 (99934387-99933401)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-990, gnl|bosTau2|chr10 (47436821-47437801)
               

               
               9-990, gnl|Hg17|chr12 (87091081-87092059)
               

               
               9-990, gnl|Mm7|chr10 (99934387-99933401)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lyg (0.133103)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)

	9-990, gnl\|bosTau2\|chr10 (47436821-47437801)
	9-990, gnl\|Hg17\|chr12 (87091081-87092059)
	9-990, gnl\|Mm7\|chr10 (99934387-99933401)