Non-Coding RNA Search

Ss1.1-Pig4-TMW8003D12.3

Sequence:


               
               CGTCTGCATGCCCTTTGTCTTGTTAGAGAGGAAGAAGGGGTGTGTGTCATGCCGTACCTG
TGAGTGGTGGTACCGTTTCAGTTCATTGGACAAGGTTGTCATCTCAGAAGATGTTTCAAG
GAATGAACCCTGGCCATGACCACAGCCAGAACTTTTATGAGAGTAACATTGCTGTTGAGA
AGCTCTTAGGCAAAGTGCTGTATTTACGCATGAAAATAACACTCGTGCAGTATAAGGAAA
TGGGCCGAGTTTCGCCAATGCTGCTCTGGAGATGTTCTCCCTCAACACCTTTCTTGCTCC
CGGTGACCAGTTCCTCACAGAATCGTGAAGCCACAAGGCTGCGTGGCAGTCGCTGGTTAA
GGACATCGTGCCACCCTGTCCCCTGGGACCGAAAATCCTGCCCCTGGGAAACCTACCTTT
AGCCCGTATCACTGCTGGGTTTGTTTTTCCGTCTAAGTATTTTTCTCAAAATCATTTGCA
TGCTTACTTTCATTTGTAAACTTTACACATGTTCAGAGGGCAAAAGTATAAGCTCTTTCT
TTTCCCCCCAAGTTTGATCAGCTATGGTACCTTAATCCGTTAGGAGGGGAAGGCAGTTTT
ATCTTAGGATAGGCAAAGGGGGCTAACGGCGCTTCATGTGAGAGCCAGATGCACCGTGTG
CCCCGGGTCCTGGTTATGTGTAACGTTAACTGGGCGCCCGCACGCTTGCATCCAGAGTGA
CGAGTGGAATTGTGTTGATCGTTTTTGTCCTGTTCATTTTTATGTAAAATAATTGACATG
AAATGTTCTCTAGTTGGAACAGATATGCTCCTTTTTCTTGCCGTCGGTAAAAATACATGG
ATTTAAAAGTCATTCATTTAACCCTACCCAGGACTCTTAAGCATAGATGTTTAACTTTGA
AGTGAATCTCTCTGCTAGAAGGAAATAGCTGGGAAGACTTTAGTGATCGGGAAAACCCAT
TAGTATTGTGTGCATGTGGAAACTTTTTGTTTTGATATTGTATCTTTTTTATCTAAATGT
TCCTATTTTTGTTGAAGAAACCACTGTGCAAAAATCAAATTTTAATTGTGAACGGGATCA
TTTCAAAGAATTATGAAGATGATTAGAAGTTTTCATTTTTATCATCACCTATAAACTGTT
CTATTTATATTTCCGTTGGTAAGTACATTTTGTACTGATTGGGTAAAACATTTGAATTGA
TATGAGAAGCAGTAAAATGGAAGGTACATCTGATTCTAAATAGATTTTGGTACCAGTTCC
CTAGGGCACAAGGTGAGGTGACTTTGTTTTGTGGGCTGAAGCTGAGGAAGGGTGGATGGA
GGGTCATCCCTGTATAAAGAGAGTGGTGCTTGCCAGGGTGCAGTGGTTGTGAGTTCAGCG
AGACACGACAGCCACTTCACAAATGCTTACTGTTCCACGTAGTCTCTATTACAAAACACC
ATTCTTGTATCAATATCCTTCGGGTGTTGCTGTTACCATTTACATGATATTTATTTTAAC
CAAAACGTTATTCATATTAAATGTTTTTTCTTGAAAATGAATGTATTATGTTTATAACCC
ACAAATGCATAATTATCCTATGCCTCATATTTCAATAGTACTGTAATATGGACTTCTTTT
TGTGAAATACTTTTATTTTGTTATGCTTCAACTACACATACTAAGAAGACTCTGTTGTTA
GCTTTGAAAATTGTATAATATCCTAATATAAATAAAAACATAAAATTAAAAAATAAGTAC
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCTGCATGCCCTTTGTCTTGTTAGAGAGGAAGAAGGGGTGTGTGTCATGCCGTACCTG
TGAGTGGTGGTACCGTTTCAGTTCATTGGACAAGGTTGTCATCTCAGAAGATGTTTCAAG
GAATGAACCCTGGCCATGACCACAGCCAGAACTTTTATGAGAGTAACATTGCTGTTGAGA
AGCTCTTAGGCAAAGTGCTGTATTTACGCATGAAAATAACACTCGTGCAGTATAAGGAAA
TGGGCCGAGTTTCGCCAATGCTGCTCTGGAGATGTTCTCCCTCAACACCTTTCTTGCTCC
CGGTGACCAGTTCCTCACAGAATCGTGAAGCCACAAGGCTGCGTGGCAGTCGCTGGTTAA
GGACATCGTGCCACCCTGTCCCCTGGGACCGAAAATCCTGCCCCTGGGAAACCTACCTTT
AGCCCGTATCACTGCTGGGTTTGTTTTTCCGTCTAAGTATTTTTCTCAAAATCATTTGCA
TGCTTACTTTCATTTGTAAACTTTACACATGTTCAGAGGGCAAAAGTATAAGCTCTTTCT
TTTCCCCCCAAGTTTGATCAGCTATGGTACCTTAATCCGTTAGGAGGGGAAGGCAGTTTT
ATCTTAGGATAGGCAAAGGGGGCTAACGGCGCTTCATGTGAGAGCCAGATGCACCGTGTG
CCCCGGGTCCTGGTTATGTGTAACGTTAACTGGGCGCCCGCACGCTTGCATCCAGAGTGA
CGAGTGGAATTGTGTTGATCGTTTTTGTCCTGTTCATTTTTATGTAAAATAATTGACATG
AAATGTTCTCTAGTTGGAACAGATATGCTCCTTTTTCTTGCCGTCGGTAAAAATACATGG
ATTTAAAAGTCATTCATTTAACCCTACCCAGGACTCTTAAGCATAGATGTTTAACTTTGA
AGTGAATCTCTCTGCTAGAAGGAAATAGCTGGGAAGACTTTAGTGATCGGGAAAACCCAT
TAGTATTGTGTGCATGTGGAAACTTTTTGTTTTGATATTGTATCTTTTTTATCTAAATGT
TCCTATTTTTGTTGAAGAAACCACTGTGCAAAAATCAAATTTTAATTGTGAACGGGATCA
TTTCAAAGAATTATGAAGATGATTAGAAGTTTTCATTTTTATCATCACCTATAAACTGTT
CTATTTATATTTCCGTTGGTAAGTACATTTTGTACTGATTGGGTAAAACATTTGAATTGA
TATGAGAAGCAGTAAAATGGAAGGTACATCTGATTCTAAATAGATTTTGGTACCAGTTCC
CTAGGGCACAAGGTGAGGTGACTTTGTTTTGTGGGCTGAAGCTGAGGAAGGGTGGATGGA
GGGTCATCCCTGTATAAAGAGAGTGGTGCTTGCCAGGGTGCAGTGGTTGTGAGTTCAGCG
AGACACGACAGCCACTTCACAAATGCTTACTGTTCCACGTAGTCTCTATTACAAAACACC
ATTCTTGTATCAATATCCTTCGGGTGTTGCTGTTACCATTTACATGATATTTATTTTAAC
CAAAACGTTATTCATATTAAATGTTTTTTCTTGAAAATGAATGTATTATGTTTATAACCC
ACAAATGCATAATTATCCTATGCCTCATATTTCAATAGTACTGTAATATGGACTTCTTTT
TGTGAAATACTTTTATTTTGTTATGCTTCAACTACACATACTAAGAAGACTCTGTTGTTA
GCTTTGAAAATTGTATAATATCCTAATATAAATAAAAACATAAAATTAAAAAATAAGTAC
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               2-527, gnl|bosTau2|chr16 (55954409-55954929)
               

               
               2-527, gnl|Hg17|chr1 (195021434-195021995)
               


               
               733-1738, gnl|bosTau2|chr16 (55955085-55956088)
               

               
               733-1738, gnl|Hg17|chr1 (195022190-195023207)
               

               
               733-1738, gnl|Mm7|chr1 (138370461-138369324)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-527, gnl|bosTau2|chr16 (55954409-55954929)
               

               
               2-527, gnl|Hg17|chr1 (195021434-195021995)
               


               
               733-1738, gnl|bosTau2|chr16 (55955085-55956088)
               

               
               733-1738, gnl|Hg17|chr1 (195022190-195023207)
               

               
               733-1738, gnl|Mm7|chr1 (138370461-138369324)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

Help | Less info


               
               bfe (0.749288)
               

               
               isp (0.601504)
               

               
               aor (0.585823)
               

               
               kid (0.518941)
               

               
               ski (0.440205)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               cbl (0.229595)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.749288)
               

               
               isp (0.601504)
               

               
               aor (0.585823)
               

               
               kid (0.518941)
               

               
               ski (0.440205)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               cbl (0.229595)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	2-527, gnl\|bosTau2\|chr16 (55954409-55954929)
	2-527, gnl\|Hg17\|chr1 (195021434-195021995)

	733-1738, gnl\|bosTau2\|chr16 (55955085-55956088)
	733-1738, gnl\|Hg17\|chr1 (195022190-195023207)
	733-1738, gnl\|Mm7\|chr1 (138370461-138369324)

	bfe (0.749288)
	isp (0.601504)
	aor (0.585823)
	kid (0.518941)
	ski (0.440205)
	ste (0.405625)
	lyg (0.399308)
	elu (0.385356)
	sag (0.36543)
	gul (0.355177)
	rec (0.346141)
	spc (0.340097)
	cje (0.330469)
	fce (0.271592)
	pla (0.267344)
	ova (0.258264)
	sug (0.254582)
	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	cbl (0.229595)
	jca (0.22792)
	hea (0.204499)
	col (0.195008)
	mgm (0.180343)
	sto (0.179824)
	fty (0.17584)
	ton (0.1755)
	cut (0.169924)
	lun (0.150489)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	ute (0.132784)
	ret (0.128733)
	cbr (0.127975)
	thg (0.126791)
	pgl (0.118483)
	med (0.116252)