Ss1.1-Pig4-TMW8003D19.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGCACCAAATCTTGATTCCTTTGGACGAGATCGGGCACTGTATCAAGAGCATGCGAAA CGTCGGATTGCCGAGCGGGAGGCCAGGAGGACTCGTCGTAGACAAGCCAGAGAGCAAACC GGGAAGATGGCAGATCACCTCGAAGGCCTTTCCAGTGATGATGAAGAAACCTCTACAGAT ATTACAAATTTCAATCTGGAAAAAGATCGAATTTCAAAGGAGTCCAGCAAGGTTTTTGAA GACGTCCTCGAGAGTTTCTATTCAATCGATTGTATTAAATCCCAGTTTGAAGCGTGGCGT TCAAAATACTACATGTCCTACAAAGATGCTTACATTGGTCTTTGTTTGCCGAAGCTGTTC AATCCCCTTATAAGGCTGCAGCTTCTCACTTGGACTCCTCTTGAGGCAAAATGTCGTGAC TTCGAGAACATGCTGTGGTTTGAGTCCTTGCTGTTTTACGGTTGTGAAGAGCGAGAGCAA GAAAAAGATGATGTAGACGTTGCACTGTTACCTACTATTGTGGAAAAGGTGATTCTTCCC AAACTAACAGTGATAGCTGAAAATATGTGGGACCCCTTTTCTACCACACAGACGTCAAGA ATGGTTGGAATTACGCTAAAATTAATAAATGGATATCCTTCAGTAGTGAATGCAGAAAAC AAAAATACACAGGTGTACCTTAAAGCACTTTTATTGAGAATGAGGAGAACTTTAGATGAT GATGTATTCATGCCCTTATATCCCAAAAATGTCTTAGAAAATAAAAATTCTGGGCCTTAT TTGTTTTTTCAACGACAGTTTTGGTCTTCAGTTAAGCTCTTAGGGAATTTTCTTCAATGG TACGGCATTTTCTCAAACAAAACTCTTCAGGAATTATCAATAGACGGTCTATTAAATAGA TACATTCTCATGGCTTTTCAGAATTCAGAATATGGAGATGACAGCATCAAAAAAGCCCAG AACGTAATCAATTGTTTCCCCAAGCAGTGGTTCATGAATCTGAAAGGAGAAAGAACTATT TCTCAGTTAGAAAACTTCTGTCGGTACCTTGTACACTTAGCAGATACAATTTACAGAAAC AGTATTGGGTGCTCTGATGTGGAAAAAAGAAATGCAAGGGAAAACATAAAACAGATAGTA AAACTCCTTGCAAGTGTTCGAGCTCTGGATCATGCTCTGTCTGTTGCAAGCGATCACAAT GTGAAAGAATTTAAGTCTTTGATCGAAGGAAAATAGATCTGTGAGACTCAAAAAAAAGCC TATTTGCTCTAATACCATTCCCAATGTAAAAAGTTTGTATATATGTAAAGTTTCTTAAAC TGTAAAATACTGACTCTTGTTTTAATACAAAGAACCTTATTAATATTCAATACTGTGTCC TTAAATGCGATTTCTTCGGGATGAAAGGAGTTCAGATTATCCCTAGGAAGTTTATGAATG GTTTCCTTACTGCCCGTCATACTTTGTTTACAGAAGTGTTTTATATGGTCACCTAAATTA ACCCTCTCAGTTAATTGTCCTCTGTAAACAATGTGTGCGATGTATATTGTGTAATTATGC CTCTATATATATATATATATATATATGTACACATATATATATTTATACCACCATGGAGTT ACTTTCACACTGGAAATTTTTGGTGGTTTTCTACAGAGTAAAGCCTTTTAATAGCAGAAC ATTATTCAGTAGCAAATTGTTTTAGGGAAATTACTACATGTCGCAACAAAAGGGCTGGCA AGTGACTAGGTAGTCATCACCTTGGGTTAGCAGTTGCTGTCACTGTAGCTGTGTTGCCTT AAAACTGAGAGTCGAGTGTGGACTTTGCTGTTGGTAAACGGTGGACTTTTCTTCCTCTAA TTAGCATTGCAGTCAAACGTAGGTTTAATGTGAGCTCTAAGTAATATATGCAACATAGGT TTTTGAAAAGAACATAGAAGTTTAATTTTGGGAATTAATAGACCCACAACCTAACTGCAT GGTTTGGGGCTGACTCTCCTGTCTCATTCATGGTTTTGCTCCCTGACCAGCTTAAAAAAA ATACATGCATTGGAATTTTAGTAGTCTGTCTTAACATCCCACATATGTGAGTTATATATG CAATAAAGTTCACGCCTTGCTCATTAGCCACACCAGGCAGTTTAATATCCATGGACTTCT ATAATGTTTATACCATGTTGTAAATATTCAGAGAACTTGTTCTAAAGTTTATGCTTTCTG ATTCTGTGATTTTCAAAAGAGGAACTTTTTGGAAATTAAGGACTATTGTTTGATAATTAT ATATGTAATTAAGCTTTAGCCAAGCATTAAATTAATTTTTAAATAGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGCACCAAATCTTGATTCCTTTGGACGAGATCGGGCACTGTATCAAGAGCATGCGAAA CGTCGGATTGCCGAGCGGGAGGCCAGGAGGACTCGTCGTAGACAAGCCAGAGAGCAAACC GGGAAGATGGCAGATCACCTCGAAGGCCTTTCCAGTGATGATGAAGAAACCTCTACAGAT ATTACAAATTTCAATCTGGAAAAAGATCGAATTTCAAAGGAGTCCAGCAAGGTTTTTGAA GACGTCCTCGAGAGTTTCTATTCAATCGATTGTATTAAATCCCAGTTTGAAGCGTGGCGT TCAAAATACTACATGTCCTACAAAGATGCTTACATTGGTCTTTGTTTGCCGAAGCTGTTC AATCCCCTTATAAGGCTGCAGCTTCTCACTTGGACTCCTCTTGAGGCAAAATGTCGTGAC TTCGAGAACATGCTGTGGTTTGAGTCCTTGCTGTTTTACGGTTGTGAAGAGCGAGAGCAA GAAAAAGATGATGTAGACGTTGCACTGTTACCTACTATTGTGGAAAAGGTGATTCTTCCC AAACTAACAGTGATAGCTGAAAATATGTGGGACCCCTTTTCTACCACACAGACGTCAAGA ATGGTTGGAATTACGCTAAAATTAATAAATGGATATCCTTCAGTAGTGAATGCAGAAAAC AAAAATACACAGGTGTACCTTAAAGCACTTTTATTGAGAATGAGGAGAACTTTAGATGAT GATGTATTCATGCCCTTATATCCCAAAAATGTCTTAGAAAATAAAAATTCTGGGCCTTAT TTGTTTTTTCAACGACAGTTTTGGTCTTCAGTTAAGCTCTTAGGGAATTTTCTTCAATGG TACGGCATTTTCTCAAACAAAACTCTTCAGGAATTATCAATAGACGGTCTATTAAATAGA TACATTCTCATGGCTTTTCAGAATTCAGAATATGGAGATGACAGCATCAAAAAAGCCCAG AACGTAATCAATTGTTTCCCCAAGCAGTGGTTCATGAATCTGAAAGGAGAAAGAACTATT TCTCAGTTAGAAAACTTCTGTCGGTACCTTGTACACTTAGCAGATACAATTTACAGAAAC AGTATTGGGTGCTCTGATGTGGAAAAAAGAAATGCAAGGGAAAACATAAAACAGATAGTA AAACTCCTTGCAAGTGTTCGAGCTCTGGATCATGCTCTGTCTGTTGCAAGCGATCACAAT GTGAAAGAATTTAAGTCTTTGATCGAAGGAAAATAGATCTGTGAGACTCAAAAAAAAGCC TATTTGCTCTAATACCATTCCCAATGTAAAAAGTTTGTATATATGTAAAGTTTCTTAAAC TGTAAAATACTGACTCTTGTTTTAATACAAAGAACCTTATTAATATTCAATACTGTGTCC TTAAATGCGATTTCTTCGGGATGAAAGGAGTTCAGATTATCCCTAGGAAGTTTATGAATG GTTTCCTTACTGCCCGTCATACTTTGTTTACAGAAGTGTTTTATATGGTCACCTAAATTA ACCCTCTCAGTTAATTGTCCTCTGTAAACAATGTGTGCGATGTATATTGTGTAATTATGC CTCTATATATATATATATATATATATGTACACATATATATATTTATACCACCATGGAGTT ACTTTCACACTGGAAATTTTTGGTGGTTTTCTACAGAGTAAAGCCTTTTAATAGCAGAAC ATTATTCAGTAGCAAATTGTTTTAGGGAAATTACTACATGTCGCAACAAAAGGGCTGGCA AGTGACTAGGTAGTCATCACCTTGGGTTAGCAGTTGCTGTCACTGTAGCTGTGTTGCCTT AAAACTGAGAGTCGAGTGTGGACTTTGCTGTTGGTAAACGGTGGACTTTTCTTCCTCTAA TTAGCATTGCAGTCAAACGTAGGTTTAATGTGAGCTCTAAGTAATATATGCAACATAGGT TTTTGAAAAGAACATAGAAGTTTAATTTTGGGAATTAATAGACCCACAACCTAACTGCAT GGTTTGGGGCTGACTCTCCTGTCTCATTCATGGTTTTGCTCCCTGACCAGCTTAAAAAAA ATACATGCATTGGAATTTTAGTAGTCTGTCTTAACATCCCACATATGTGAGTTATATATG CAATAAAGTTCACGCCTTGCTCATTAGCCACACCAGGCAGTTTAATATCCATGGACTTCT ATAATGTTTATACCATGTTGTAAATATTCAGAGAACTTGTTCTAAAGTTTATGCTTTCTG ATTCTGTGATTTTCAAAAGAGGAACTTTTTGGAAATTAAGGACTATTGTTTGATAATTAT ATATGTAATTAAGCTTTAGCCAAGCATTAAATTAATTTTTAAATAGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 204-406, gnl|bosTau2|chr1 (442348-442146) | |
| 204-406, gnl|Hg17|chr21 (33042882-33042680) | |
| 204-406, gnl|Mm7|chr16 (91075598-91075396) | |
| 545-674, gnl|bosTau2|chr1 (440264-440135) | |
| 545-674, gnl|canFam2|chr31 (30434032-30434191) | |
| 545-674, gnl|danRer3|chr10 (11286187-11286047) | |
| 545-674, gnl|dasNov1|scaffold_728 (32054-32188) | |
| 545-674, gnl|echTel1|scaffold_285522 (44149-44302) | |
| 545-674, gnl|fr1|chrUn (204866363-204866500) | |
| 545-674, gnl|galGal2|chr1 (98832146-98832301) | |
| 545-674, gnl|hg17|chr21 (33038965-33039116) | |
| 545-674, gnl|Hg17|chr21 (33039101-33038972) | |
| 545-674, gnl|loxAfr1|scaffold_50770 (8241-8088) | |
| 545-674, gnl|mm7|chr16 (91073226-91073379) | |
| 545-674, gnl|Mm7|chr16 (91073366-91073237) | |
| 545-674, gnl|monDom2|scaffold_29 (15303554-15303384) | |
| 545-674, gnl|oryCun1|scaffold_212060 (28445-28598) | |
| 545-674, gnl|panTro1|chr22 (33001560-33001711) | |
| 545-674, gnl|rheMac2|chr3 (13783728-13783577) | |
| 545-674, gnl|rn3|chr11 (31010117-31010270) | |
| 545-674, gnl|tetNig1|chr7 (3276818-3276951) | |
| 545-674, gnl|xenTro1|scaffold_390 (967801-967947) | |
| 708-816, gnl|bosTau2|chr1 (438986-438882) | |
| 708-816, gnl|canFam2|chr31 (30432177-30432265) | |
| 708-816, gnl|danRer3|chr10 (11287840-11287749) | |
| 708-816, gnl|dasNov1|scaffold_728 (30824-30918) | |
| 708-816, gnl|fr1|chrUn (204866059-204866146) | |
| 708-816, gnl|galGal2|chr1 (98831105-98831193) | |
| 708-816, gnl|hg17|chr21 (33037424-33037520) | |
| 708-816, gnl|Hg17|chr21 (33037535-33037430) | |
| 708-816, gnl|loxAfr1|scaffold_50770 (9465-9368) | |
| 708-816, gnl|mm7|chr16 (91071946-91072034) | |
| 708-816, gnl|Mm7|chr16 (91072049-91071952) | |
| 708-816, gnl|monDom2|scaffold_29 (15304399-15304298) | |
| 708-816, gnl|oryCun1|scaffold_212060 (27270-27364) | |
| 708-816, gnl|panTro1|chr22 (33000015-33000111) | |
| 708-816, gnl|rheMac2|chr3 (13785260-13785165) | |
| 708-816, gnl|rn3|chr11 (31008888-31008976) | |
| 708-816, gnl|tetNig1|chr7 (3276496-3276583) | |
| 708-816, gnl|xenTro1|scaffold_390 (966041-966132) | |
| 964-1122, gnl|bosTau2|chr1 (433077-432919) | |
| 964-1122, gnl|canFam2|chr31 (30425634-30425819) | |
| 964-1122, gnl|danRer3|chr10 (11290395-11290215) | |
| 964-1122, gnl|dasNov1|scaffold_728 (24783-24967) | |
| 964-1122, gnl|echTel1|scaffold_296897 (14691-14871) | |
| 964-1122, gnl|fr1|chrUn (204865587-204865766) | |
| 964-1122, gnl|galGal2|chr1 (98828959-98829144) | |
| 964-1122, gnl|hg17|chr21 (33031432-33031617) | |
| 964-1122, gnl|Hg17|chr21 (33031590-33031432) | |
| 964-1122, gnl|loxAfr1|scaffold_50770 (14573-14391) | |
| 964-1122, gnl|mm7|chr16 (91066743-91066923) | |
| 964-1122, gnl|Mm7|chr16 (91066901-91066743) | |
| 964-1122, gnl|oryCun1|scaffold_215008 (4232-4047) | |
| 964-1122, gnl|panTro1|chr22 (32994040-32994225) | |
| 964-1122, gnl|rheMac2|chr3 (13790917-13790732) | |
| 964-1122, gnl|rn3|chr11 (31004024-31004204) | |
| 964-1122, gnl|tetNig1|chr7 (3276004-3276166) | |
| 964-1122, gnl|xenTro1|scaffold_390 (963095-963278) | |
| 1574-2171, gnl|bosTau2|chr1 (431245-430649) | |
| 1574-2171, gnl|Hg17|chr21 (33028834-33028238) | |
| 1574-2171, gnl|Mm7|chr16 (91064673-91064098) | |
| 2219-2328, gnl|bosTau2|chr1 (430411-430302) | |
| 2219-2328, gnl|Hg17|chr21 (33028190-33028080) | |
| 2219-2328, gnl|Mm7|chr16 (91064047-91063938) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-406, gnl|bosTau2|chr1 (442348-442146) | |
| 204-406, gnl|Hg17|chr21 (33042882-33042680) | |
| 204-406, gnl|Mm7|chr16 (91075598-91075396) | |
| 545-674, gnl|bosTau2|chr1 (440264-440135) | |
| 545-674, gnl|canFam2|chr31 (30434032-30434191) | |
| 545-674, gnl|danRer3|chr10 (11286187-11286047) | |
| 545-674, gnl|dasNov1|scaffold_728 (32054-32188) | |
| 545-674, gnl|echTel1|scaffold_285522 (44149-44302) | |
| 545-674, gnl|fr1|chrUn (204866363-204866500) | |
| 545-674, gnl|galGal2|chr1 (98832146-98832301) | |
| 545-674, gnl|hg17|chr21 (33038965-33039116) | |
| 545-674, gnl|Hg17|chr21 (33039101-33038972) | |
| 545-674, gnl|loxAfr1|scaffold_50770 (8241-8088) | |
| 545-674, gnl|mm7|chr16 (91073226-91073379) | |
| 545-674, gnl|Mm7|chr16 (91073366-91073237) | |
| 545-674, gnl|monDom2|scaffold_29 (15303554-15303384) | |
| 545-674, gnl|oryCun1|scaffold_212060 (28445-28598) | |
| 545-674, gnl|panTro1|chr22 (33001560-33001711) | |
| 545-674, gnl|rheMac2|chr3 (13783728-13783577) | |
| 545-674, gnl|rn3|chr11 (31010117-31010270) | |
| 545-674, gnl|tetNig1|chr7 (3276818-3276951) | |
| 545-674, gnl|xenTro1|scaffold_390 (967801-967947) | |
| 708-816, gnl|bosTau2|chr1 (438986-438882) | |
| 708-816, gnl|canFam2|chr31 (30432177-30432265) | |
| 708-816, gnl|danRer3|chr10 (11287840-11287749) | |
| 708-816, gnl|dasNov1|scaffold_728 (30824-30918) | |
| 708-816, gnl|fr1|chrUn (204866059-204866146) | |
| 708-816, gnl|galGal2|chr1 (98831105-98831193) | |
| 708-816, gnl|hg17|chr21 (33037424-33037520) | |
| 708-816, gnl|Hg17|chr21 (33037535-33037430) | |
| 708-816, gnl|loxAfr1|scaffold_50770 (9465-9368) | |
| 708-816, gnl|mm7|chr16 (91071946-91072034) | |
| 708-816, gnl|Mm7|chr16 (91072049-91071952) | |
| 708-816, gnl|monDom2|scaffold_29 (15304399-15304298) | |
| 708-816, gnl|oryCun1|scaffold_212060 (27270-27364) | |
| 708-816, gnl|panTro1|chr22 (33000015-33000111) | |
| 708-816, gnl|rheMac2|chr3 (13785260-13785165) | |
| 708-816, gnl|rn3|chr11 (31008888-31008976) | |
| 708-816, gnl|tetNig1|chr7 (3276496-3276583) | |
| 708-816, gnl|xenTro1|scaffold_390 (966041-966132) | |
| 964-1122, gnl|bosTau2|chr1 (433077-432919) | |
| 964-1122, gnl|canFam2|chr31 (30425634-30425819) | |
| 964-1122, gnl|danRer3|chr10 (11290395-11290215) | |
| 964-1122, gnl|dasNov1|scaffold_728 (24783-24967) | |
| 964-1122, gnl|echTel1|scaffold_296897 (14691-14871) | |
| 964-1122, gnl|fr1|chrUn (204865587-204865766) | |
| 964-1122, gnl|galGal2|chr1 (98828959-98829144) | |
| 964-1122, gnl|hg17|chr21 (33031432-33031617) | |
| 964-1122, gnl|Hg17|chr21 (33031590-33031432) | |
| 964-1122, gnl|loxAfr1|scaffold_50770 (14573-14391) | |
| 964-1122, gnl|mm7|chr16 (91066743-91066923) | |
| 964-1122, gnl|Mm7|chr16 (91066901-91066743) | |
| 964-1122, gnl|oryCun1|scaffold_215008 (4232-4047) | |
| 964-1122, gnl|panTro1|chr22 (32994040-32994225) | |
| 964-1122, gnl|rheMac2|chr3 (13790917-13790732) | |
| 964-1122, gnl|rn3|chr11 (31004024-31004204) | |
| 964-1122, gnl|tetNig1|chr7 (3276004-3276166) | |
| 964-1122, gnl|xenTro1|scaffold_390 (963095-963278) | |
| 1574-2171, gnl|bosTau2|chr1 (431245-430649) | |
| 1574-2171, gnl|Hg17|chr21 (33028834-33028238) | |
| 1574-2171, gnl|Mm7|chr16 (91064673-91064098) | |
| 2219-2328, gnl|bosTau2|chr1 (430411-430302) | |
| 2219-2328, gnl|Hg17|chr21 (33028190-33028080) | |
| 2219-2328, gnl|Mm7|chr16 (91064047-91063938) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| thg (0.633955) | |
| sin (0.524843) | |
| kid (0.518941) | |
| mgp (0.461361) | |
| ret (0.3862) | |
| gul (0.355177) | |
| fco (0.314416) | |
| lin (0.291206) | |
| csk (0.281492) | |
| pan (0.23596) | |
| tes (0.207814) | |
| eje (0.197668) | |
| fty (0.17584) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| mga (0.160205) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lyg (0.133103) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.633955) | |
| sin (0.524843) | |
| kid (0.518941) | |
| mgp (0.461361) | |
| ret (0.3862) | |
| gul (0.355177) | |
| fco (0.314416) | |
| lin (0.291206) | |
| csk (0.281492) | |
| pan (0.23596) | |
| tes (0.207814) | |
| eje (0.197668) | |
| fty (0.17584) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| mga (0.160205) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lyg (0.133103) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) |