Ss1.1-Pig4-TMW8003E02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGCAGAATCTCAGCCTGGAAGGCCTGCGGCTTTCGGATCCCATTGTCAATAATCTTGC TCAGAACACAAATTTAGTGCGACTAAACCTTTCTGGGTGTTCTGGATTCTCCGAATCTGC CCTAAAGACCTTGCTGAGCAGCTGTTCCAGATTGGATGAGCTGAACCTCTCCTGGTGTTA TGACTTCACTGAAAAGCACGTGCAGGTGGCTGTTGCACACGTGTCAGAGACCATCACCCA GCTGAATCTCAGCGGCTACCGAAAGAATCTGCAGAAATCAGATGTCTCCACCTTAGTTGG AAGATGTCCCAATCTGGTCCACCTAGATTTAAGTGACAGTGTCATGCTGAAGAATGACTG CTTTCAGGAATTTTACCAGCTCAACTACCTCCAACACCTATCCCTCAGTCGATGCTATGA CATAATACCCGAAACTTTACTGTAAGTATCTTTATTTTTTAAAGCAAGCAGAAGGCAAGG ATGGAAAGAGGTGTCACTTGGTGTAAAGAGTTGTCCCTGTGTTATTAACAACAGATGTTT GATTAATTGTTCCCATTTTACCACCATTGCCAGGCCAACCATCGGCAACAAAAAGAACCA GGAGATATGGGGCATCAAATGCCGACTGACACTGCAGAAGCCCAGTTGTCTATGAAGTAT CTGTTGCAGGATGGTGTCTCCTCTTTTCTTTGAACAGGGAAAGTAGGCAGGAAGCCCAGT TGCTGGAGAACTCAGCTATTTTTATTCTTGGTTTTCCCTTGCCTTCCTTCTCCAAGTATA TTAGCGAACCATTCGAGAGAGAAAAAGACAAAGTGTTGCTTCGAAAAAATGACTCTGAAA GCTTTTATCACTGCTCTACCCCTAAGAGTCTTAAGTTGTAAGAGTCTAAGTTGTAGACCT TTTAAAATTTTAGGAGAGTGAGCCTATCATTTCAAGAGAGCTTAAAGAGCAAAATTTGAG TCACCTCTTCCAAGTGCCCTTCTTATTAAATTTATTTAGAATCATGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGCAGAATCTCAGCCTGGAAGGCCTGCGGCTTTCGGATCCCATTGTCAATAATCTTGC TCAGAACACAAATTTAGTGCGACTAAACCTTTCTGGGTGTTCTGGATTCTCCGAATCTGC CCTAAAGACCTTGCTGAGCAGCTGTTCCAGATTGGATGAGCTGAACCTCTCCTGGTGTTA TGACTTCACTGAAAAGCACGTGCAGGTGGCTGTTGCACACGTGTCAGAGACCATCACCCA GCTGAATCTCAGCGGCTACCGAAAGAATCTGCAGAAATCAGATGTCTCCACCTTAGTTGG AAGATGTCCCAATCTGGTCCACCTAGATTTAAGTGACAGTGTCATGCTGAAGAATGACTG CTTTCAGGAATTTTACCAGCTCAACTACCTCCAACACCTATCCCTCAGTCGATGCTATGA CATAATACCCGAAACTTTACTGTAAGTATCTTTATTTTTTAAAGCAAGCAGAAGGCAAGG ATGGAAAGAGGTGTCACTTGGTGTAAAGAGTTGTCCCTGTGTTATTAACAACAGATGTTT GATTAATTGTTCCCATTTTACCACCATTGCCAGGCCAACCATCGGCAACAAAAAGAACCA GGAGATATGGGGCATCAAATGCCGACTGACACTGCAGAAGCCCAGTTGTCTATGAAGTAT CTGTTGCAGGATGGTGTCTCCTCTTTTCTTTGAACAGGGAAAGTAGGCAGGAAGCCCAGT TGCTGGAGAACTCAGCTATTTTTATTCTTGGTTTTCCCTTGCCTTCCTTCTCCAAGTATA TTAGCGAACCATTCGAGAGAGAAAAAGACAAAGTGTTGCTTCGAAAAAATGACTCTGAAA GCTTTTATCACTGCTCTACCCCTAAGAGTCTTAAGTTGTAAGAGTCTAAGTTGTAGACCT TTTAAAATTTTAGGAGAGTGAGCCTATCATTTCAAGAGAGCTTAAAGAGCAAAATTTGAG TCACCTCTTCCAAGTGCCCTTCTTATTAAATTTATTTAGAATCATGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 231-339, - strand, RNAz p=0.544509 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 231-339, - strand, RNAz p=0.544509 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-441, gnl|bosTau2|chr11 (67336983-67336545) | |
| 1-441, gnl|Hg17|chrX (95682441-95682865) | |
| 1-441, gnl|Mm7|chr15 (9181865-9174806) | |
| 543-880, gnl|bosTau2|chr11 (67336443-67336108) | |
| 543-880, gnl|canFam2|chr4 (75551805-75551440) | |
| 543-880, gnl|dasNov1|scaffold_209302 (1473-1120) | |
| 543-880, gnl|echTel1|scaffold_311671 (39354-38989) | |
| 543-880, gnl|galGal2|chrZ_random (10003872-10004215) | |
| 543-880, gnl|hg17|chrX (95682867-95683229) | |
| 543-880, gnl|Hg17|chrX (95682967-95683298) | |
| 543-880, gnl|loxAfr1|scaffold_11218 (53795-53428) | |
| 543-880, gnl|mm7|chr15 (9171813-9171453) | |
| 543-880, gnl|Mm7|chr15 (9171711-9171380) | |
| 543-880, gnl|monDom2|scaffold_20 (36368320-36367928) | |
| 543-880, gnl|oryCun1|scaffold_124264 (2853-3207) | |
| 543-880, gnl|panTro1|chr4 (80603602-80603242) | |
| 543-880, gnl|rheMac2|chrX (95308747-95309110) | |
| 543-880, gnl|rn3|chr1 (165685859-165685501) | |
| 543-880, gnl|xenTro1|scaffold_363 (1115325-1115668) | |
| 908-1008, gnl|bosTau2|chr11 (67335765-67335665) | |
| 908-1008, gnl|Hg17|chrX (95683316-95683412) | |
| 908-1008, gnl|Mm7|chr15 (9171366-9171269) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-441, gnl|bosTau2|chr11 (67336983-67336545) | |
| 1-441, gnl|Hg17|chrX (95682441-95682865) | |
| 1-441, gnl|Mm7|chr15 (9181865-9174806) | |
| 543-880, gnl|bosTau2|chr11 (67336443-67336108) | |
| 543-880, gnl|canFam2|chr4 (75551805-75551440) | |
| 543-880, gnl|dasNov1|scaffold_209302 (1473-1120) | |
| 543-880, gnl|echTel1|scaffold_311671 (39354-38989) | |
| 543-880, gnl|galGal2|chrZ_random (10003872-10004215) | |
| 543-880, gnl|hg17|chrX (95682867-95683229) | |
| 543-880, gnl|Hg17|chrX (95682967-95683298) | |
| 543-880, gnl|loxAfr1|scaffold_11218 (53795-53428) | |
| 543-880, gnl|mm7|chr15 (9171813-9171453) | |
| 543-880, gnl|Mm7|chr15 (9171711-9171380) | |
| 543-880, gnl|monDom2|scaffold_20 (36368320-36367928) | |
| 543-880, gnl|oryCun1|scaffold_124264 (2853-3207) | |
| 543-880, gnl|panTro1|chr4 (80603602-80603242) | |
| 543-880, gnl|rheMac2|chrX (95308747-95309110) | |
| 543-880, gnl|rn3|chr1 (165685859-165685501) | |
| 543-880, gnl|xenTro1|scaffold_363 (1115325-1115668) | |
| 908-1008, gnl|bosTau2|chr11 (67335765-67335665) | |
| 908-1008, gnl|Hg17|chrX (95683316-95683412) | |
| 908-1008, gnl|Mm7|chr15 (9171366-9171269) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| spl (0.143184) | |
| cty (0.10408) |