Ss1.1-Pig4-TMW8003F19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACGGGCCCCTCAGCTCTTCTGGCAATCCACAACTTCCGGTGGGCAGACCGGAAACGCC TCTGCGGGGCAGGGCTACAAGGCCCCTCTGCCCCGGAACCTGGAGGGCGGGGCTCGCCGC TGGGGAAGGCGGGGCCAAGCGGGGCCCGGCAAGTCTGGCGCCCTGAGCTACCTGGGTAAA GCCCAAGATGGCTGCGTCCATGTAATACCAATGTGAACCCAGTGGGGACGGTTCTTATCT CCTCGAAGGCCACATCTGGCCCTCCCTCCTGTGCTCCTGCAGAGGGCTGTTGTAGCAGAG AGACGAGGGCAATGGCAGGGAGCCTTTCTTGGGTGACAGGCAGGGGCCTGTGGGGCCAGT TGCCCTTGACCTGTAGAAGCTTCTCTCTGGGTATTCCTAGATTGTTCCATGTAAGGGTCA CTCTCCCGCCTCGCAAAGTGGTTGATCGTTGGAACGAGAAGAGGGCCATGTTCGGGGTGT ATGACAATATCGGGATCCTGGGAAACTTTGAAAAACACCCCAAAGAACTGATCAAGGGCC CCATATGGCTTCGAGGCTGGAAGGGGAATGAATTACAGCGTTGTATCCGAAAGAAGAGAA TGGTTGGAAATCGGATGTTCATTGATGACCTGCACAATCTTAACAAACGCATCAGCTATC TCTACAAACACTTTAACCGACATGGAAAGTACCGGTAGAAGAGAAAGCTAGGAACTGTGG AGGAGGCATATCTACCACCCAGGAGAAGGAGGAAGTACTTTTCCTTATGAGGAAAGAGAT TTGTATGCCCGCAGTAATAAAATGGGACTTCTTTGGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACGGGCCCCTCAGCTCTTCTGGCAATCCACAACTTCCGGTGGGCAGACCGGAAACGCC TCTGCGGGGCAGGGCTACAAGGCCCCTCTGCCCCGGAACCTGGAGGGCGGGGCTCGCCGC TGGGGAAGGCGGGGCCAAGCGGGGCCCGGCAAGTCTGGCGCCCTGAGCTACCTGGGTAAA GCCCAAGATGGCTGCGTCCATGTAATACCAATGTGAACCCAGTGGGGACGGTTCTTATCT CCTCGAAGGCCACATCTGGCCCTCCCTCCTGTGCTCCTGCAGAGGGCTGTTGTAGCAGAG AGACGAGGGCAATGGCAGGGAGCCTTTCTTGGGTGACAGGCAGGGGCCTGTGGGGCCAGT TGCCCTTGACCTGTAGAAGCTTCTCTCTGGGTATTCCTAGATTGTTCCATGTAAGGGTCA CTCTCCCGCCTCGCAAAGTGGTTGATCGTTGGAACGAGAAGAGGGCCATGTTCGGGGTGT ATGACAATATCGGGATCCTGGGAAACTTTGAAAAACACCCCAAAGAACTGATCAAGGGCC CCATATGGCTTCGAGGCTGGAAGGGGAATGAATTACAGCGTTGTATCCGAAAGAAGAGAA TGGTTGGAAATCGGATGTTCATTGATGACCTGCACAATCTTAACAAACGCATCAGCTATC TCTACAAACACTTTAACCGACATGGAAAGTACCGGTAGAAGAGAAAGCTAGGAACTGTGG AGGAGGCATATCTACCACCCAGGAGAAGGAGGAAGTACTTTTCCTTATGAGGAAAGAGAT TTGTATGCCCGCAGTAATAAAATGGGACTTCTTTGGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 94-393, gnl|bosTau2|chr5 (60664554-60664841) | |
| 94-393, gnl|canFam2|chr27 (41526166-41525844) | |
| 94-393, gnl|canFam2|chr27 (41526118-41525736) | |
| 94-393, gnl|dasNov1|scaffold_26103 (41164-40845) | |
| 94-393, gnl|dasNov1|scaffold_26103 (41116-40755) | |
| 94-393, gnl|echTel1|scaffold_115210 (597-823) | |
| 94-393, gnl|echTel1|scaffold_325024 (43507-43878) | |
| 94-393, gnl|hg17|chr12 (6472429-6472801) | |
| 94-393, gnl|Hg17|chr12 (6472792-6472482) | |
| 94-393, gnl|hg17|chr21 (43408795-43409029) | |
| 94-393, gnl|loxAfr1|scaffold_13632 (39246-39566) | |
| 94-393, gnl|loxAfr1|scaffold_13632 (39294-39665) | |
| 94-393, gnl|mm7|chr2 (121222077-121221832) | |
| 94-393, gnl|mm7|chr6 (125218793-125218405) | |
| 94-393, gnl|Mm7|chr6 (125218444-125218737) | |
| 94-393, gnl|monDom2|scaffold_31 (14890195-14890609) | |
| 94-393, gnl|oryCun1|scaffold_199228 (45286-45567) | |
| 94-393, gnl|oryCun1|scaffold_199228 (45331-45692) | |
| 94-393, gnl|panTro1|chr10 (7006685-7007057) | |
| 94-393, gnl|panTro1|chr22 (43522050-43522284) | |
| 94-393, gnl|rheMac2|chr11 (6645613-6645923) | |
| 94-393, gnl|rheMac2|chr11 (6645661-6646046) | |
| 94-393, gnl|rn3|chr4 (161557543-161557212) | |
| 94-393, gnl|rn3|chr4 (161557496-161557105) | |
| 501-818, gnl|bosTau2|chr5 (60665449-60665766) | |
| 501-818, gnl|Hg17|chr12 (6471895-6471577) | |
| 501-818, gnl|Mm7|chr6 (125219523-125219821) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-393, gnl|bosTau2|chr5 (60664554-60664841) | |
| 94-393, gnl|canFam2|chr27 (41526166-41525844) | |
| 94-393, gnl|canFam2|chr27 (41526118-41525736) | |
| 94-393, gnl|dasNov1|scaffold_26103 (41164-40845) | |
| 94-393, gnl|dasNov1|scaffold_26103 (41116-40755) | |
| 94-393, gnl|echTel1|scaffold_115210 (597-823) | |
| 94-393, gnl|echTel1|scaffold_325024 (43507-43878) | |
| 94-393, gnl|hg17|chr12 (6472429-6472801) | |
| 94-393, gnl|Hg17|chr12 (6472792-6472482) | |
| 94-393, gnl|hg17|chr21 (43408795-43409029) | |
| 94-393, gnl|loxAfr1|scaffold_13632 (39246-39566) | |
| 94-393, gnl|loxAfr1|scaffold_13632 (39294-39665) | |
| 94-393, gnl|mm7|chr2 (121222077-121221832) | |
| 94-393, gnl|mm7|chr6 (125218793-125218405) | |
| 94-393, gnl|Mm7|chr6 (125218444-125218737) | |
| 94-393, gnl|monDom2|scaffold_31 (14890195-14890609) | |
| 94-393, gnl|oryCun1|scaffold_199228 (45286-45567) | |
| 94-393, gnl|oryCun1|scaffold_199228 (45331-45692) | |
| 94-393, gnl|panTro1|chr10 (7006685-7007057) | |
| 94-393, gnl|panTro1|chr22 (43522050-43522284) | |
| 94-393, gnl|rheMac2|chr11 (6645613-6645923) | |
| 94-393, gnl|rheMac2|chr11 (6645661-6646046) | |
| 94-393, gnl|rn3|chr4 (161557543-161557212) | |
| 94-393, gnl|rn3|chr4 (161557496-161557105) | |
| 501-818, gnl|bosTau2|chr5 (60665449-60665766) | |
| 501-818, gnl|Hg17|chr12 (6471895-6471577) | |
| 501-818, gnl|Mm7|chr6 (125219523-125219821) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| tes (0.415628) | |
| sme (0.305437) | |
| cag (0.302389) | |
| ldo (0.291008) | |
| nca (0.273748) | |
| che (0.272628) | |
| pla (0.267344) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| sme (0.305437) | |
| cag (0.302389) | |
| ldo (0.291008) | |
| nca (0.273748) | |
| che (0.272628) | |
| pla (0.267344) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) |