Non-Coding RNA Search

Ss1.1-Pig4-TMW8003F22.3

Sequence:


               
               TTTTTTTTTTTTAAGTTCAAAACTTTTACTGTAAGGTTGTGTTGTGAGCCAGCTTAGAGA
TGTTTTCATGGTTGTCATTACATGGGATTTATGGACAAATCAGAGTTTGCTGTGATACAT
ATATATCACATATATATAAATATATATATACACATGTACACACTTTTAAATTGTAATATT
TCATAAATCCGTCAAATTTTAAAGACACACTCTTCCCCTCTTTTGTGTATATAAAGTTGT
GGTTTTTGAGAATAGAGTCGGTCTGCTGTGCTTTCACTTCTGTCATCCCAAAGGTTTGAT
TAGATCTCTTTTTTTTCTCCAAAGATAAAAAAATGCAGTGAAGTTCAATTTACAGGGTCA
ATATACTGATATTTCTAGATATGGTGAAGTTCTAAAAGAATTTACTGGGTCTGCATTTTT
AAGTATTTCATGTAGGTAGAGTAATATATTTTTATATAACACTATTTCTACATTGATTTC
AAGACTGTTTTCAGTGACTTTCTCAAGTGCATGTGTTAAATCGTTTGGAATGAATGGCAG
TAACCATTATAACCAATTCAGAGCACGTGTAATACATGTGATTATAGAAAACAGTGTGTT
TATACTGTACACTGAAACCTAATGCCTCTTTTCTAAAGCTTTGTACATTTTTCATGAAAT
AGATTAAATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTAAGTTCAAAACTTTTACTGTAAGGTTGTGTTGTGAGCCAGCTTAGAGA
TGTTTTCATGGTTGTCATTACATGGGATTTATGGACAAATCAGAGTTTGCTGTGATACAT
ATATATCACATATATATAAATATATATATACACATGTACACACTTTTAAATTGTAATATT
TCATAAATCCGTCAAATTTTAAAGACACACTCTTCCCCTCTTTTGTGTATATAAAGTTGT
GGTTTTTGAGAATAGAGTCGGTCTGCTGTGCTTTCACTTCTGTCATCCCAAAGGTTTGAT
TAGATCTCTTTTTTTTCTCCAAAGATAAAAAAATGCAGTGAAGTTCAATTTACAGGGTCA
ATATACTGATATTTCTAGATATGGTGAAGTTCTAAAAGAATTTACTGGGTCTGCATTTTT
AAGTATTTCATGTAGGTAGAGTAATATATTTTTATATAACACTATTTCTACATTGATTTC
AAGACTGTTTTCAGTGACTTTCTCAAGTGCATGTGTTAAATCGTTTGGAATGAATGGCAG
TAACCATTATAACCAATTCAGAGCACGTGTAATACATGTGATTATAGAAAACAGTGTGTT
TATACTGTACACTGAAACCTAATGCCTCTTTTCTAAAGCTTTGTACATTTTTCATGAAAT
AGATTAAATATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               45-193, - strand, RNAz p=0.999281

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-193, - strand, RNAz p=0.999281

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-672, gnl|bosTau2|chr26 (22661531-22660849)
               

               
               5-672, gnl|Hg17|chr10 (115666287-115666931)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-672, gnl|bosTau2|chr26 (22661531-22660849)
               

               
               5-672, gnl|Hg17|chr10 (115666287-115666931)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               lin (0.291206)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

	5-672, gnl\|bosTau2\|chr26 (22661531-22660849)
	5-672, gnl\|Hg17\|chr10 (115666287-115666931)

	lin (0.291206)
	tra (0.246184)
	mgp (0.230681)
	mgm (0.180343)
	eye (0.170503)
	liv (0.146284)
	ret (0.128733)
	ldo (0.0970026)