Ss1.1-Pig4-TMW8003G03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTGGGCCTGGCCTGGCTGTGCTTGGGGTGGGGAAAGGGGTGGACTCCCCTGCGCCCAG CCCCAGCCTCTCTGCCCTTGGGCCCCAGCAGGAGGTGCTGCCTCCCTAACTTACTGCACC CCAGCTGGGGATAACCTGGGGGAGGGGTATAGTCTGAATGTATCCTCCCCATTGAACCTC AGCTGCCTGACGCACAGTGGGGGTGGGGGCGTCTAGGGGAACCAGGGCTGAGTCATGGGT CCTGGGGGAGAAGTTACAGATCCACAGGAGTGACTGTCACTTAACTTGTGGAACCCAGCT CCCTACCTGGTCCTTGTCTCCAAGCACCTTCTACAGAGAGGAGCTCTGAGGGTGGCAGAG GGGGTGCTGCAGAAGGGGGTGGCCCCCACGGGCCCCGGCTGCCCCTCCGCCGCCTGCCTG TGCCGCTTCTCTGTGCCTATTGTTGAGCCCTGATGGGTGGGGGGAGATGGCCACCCTTGG GAGCTGGAGGGAGCTGTCCCCGGGCTGGGGCATCTGCCTGGTGGCTTTGCGGGGAGCTGC TTATGGGTATGGTCTGTCCAAACACCGTGTTTCAAAGGGAGTGGGTGTGAGCTAGCAAGC GAGGCATCCCCACAGCTGATCAAGAACTTTTTCTTGTTTTTAAACCATCACGTCTTCATT TCACATTGGAATAAAGAGAGTTTTTGAAACCTGCGGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTGGGCCTGGCCTGGCTGTGCTTGGGGTGGGGAAAGGGGTGGACTCCCCTGCGCCCAG CCCCAGCCTCTCTGCCCTTGGGCCCCAGCAGGAGGTGCTGCCTCCCTAACTTACTGCACC CCAGCTGGGGATAACCTGGGGGAGGGGTATAGTCTGAATGTATCCTCCCCATTGAACCTC AGCTGCCTGACGCACAGTGGGGGTGGGGGCGTCTAGGGGAACCAGGGCTGAGTCATGGGT CCTGGGGGAGAAGTTACAGATCCACAGGAGTGACTGTCACTTAACTTGTGGAACCCAGCT CCCTACCTGGTCCTTGTCTCCAAGCACCTTCTACAGAGAGGAGCTCTGAGGGTGGCAGAG GGGGTGCTGCAGAAGGGGGTGGCCCCCACGGGCCCCGGCTGCCCCTCCGCCGCCTGCCTG TGCCGCTTCTCTGTGCCTATTGTTGAGCCCTGATGGGTGGGGGGAGATGGCCACCCTTGG GAGCTGGAGGGAGCTGTCCCCGGGCTGGGGCATCTGCCTGGTGGCTTTGCGGGGAGCTGC TTATGGGTATGGTCTGTCCAAACACCGTGTTTCAAAGGGAGTGGGTGTGAGCTAGCAAGC GAGGCATCCCCACAGCTGATCAAGAACTTTTTCTTGTTTTTAAACCATCACGTCTTCATT TCACATTGGAATAAAGAGAGTTTTTGAAACCTGCGGAAAAAAAAAAAA |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 194-309, - strand, RNAz p=0.898958 | |
| 212-313, - strand, RNAz p=0.615353 | |
| 429-588, - strand, RNAz p=0.996932 | |
| 453-564, - strand, RNAz p=0.632742 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 194-309, - strand, RNAz p=0.898958 | |
| 212-313, - strand, RNAz p=0.615353 | |
| 429-588, - strand, RNAz p=0.996932 | |
| 453-564, - strand, RNAz p=0.632742 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 44-694, gnl|bosTau2|chr19 (18155518-18154898) | |
| 44-694, gnl|canFam2|chr9 (50063234-50062411) | |
| 44-694, gnl|canFam2|chr9 (50062411-50063234) | |
| 44-694, gnl|canFam2|chr9 (50062407-50063068) | |
| 44-694, gnl|canFam2|chr9 (50062363-50063028) | |
| 44-694, gnl|canFam2|chr9 (50063499-50062538) | |
| 44-694, gnl|dasNov1|scaffold_7324 (3206-2303) | |
| 44-694, gnl|dasNov1|scaffold_7324 (2303-3206) | |
| 44-694, gnl|dasNov1|scaffold_7324 (2301-3024) | |
| 44-694, gnl|dasNov1|scaffold_7324 (2262-2974) | |
| 44-694, gnl|dasNov1|scaffold_7324 (3470-2432) | |
| 44-694, gnl|echTel1|scaffold_324307 (48256-49028) | |
| 44-694, gnl|echTel1|scaffold_324307 (49028-48256) | |
| 44-694, gnl|echTel1|scaffold_324307 (49032-48440) | |
| 44-694, gnl|echTel1|scaffold_324307 (49074-48503) | |
| 44-694, gnl|echTel1|scaffold_324307 (48026-48899) | |
| 44-694, gnl|hg17|chr10 (135358267-135359039) | |
| 44-694, gnl|hg17|chr17 (2539407-2540038) | |
| 44-694, gnl|Hg17|chr17 (2539983-2539433) | |
| 44-694, gnl|hg17|chr7 (64175582-64176621) | |
| 44-694, gnl|hg17|chrY (18835056-18835973) | |
| 44-694, gnl|hg17|chrY (18170059-18170976) | |
| 44-694, gnl|mm7|chr11 (74751607-74752445) | |
| 44-694, gnl|mm7|chr11 (74752445-74751607) | |
| 44-694, gnl|mm7|chr11 (74752449-74751761) | |
| 44-694, gnl|mm7|chr11 (74752489-74751830) | |
| 44-694, gnl|mm7|chr11 (74751355-74752321) | |
| 44-694, gnl|Mm7|chr11 (74751822-74752421) | |
| 44-694, gnl|monDom2|scaffold_86 (3841401-3842075) | |
| 44-694, gnl|monDom2|scaffold_86 (3841378-3841994) | |
| 44-694, gnl|monDom2|scaffold_86 (3842453-3841544) | |
| 44-694, gnl|oryCun1|scaffold_206134 (35680-36457) | |
| 44-694, gnl|oryCun1|scaffold_206134 (36457-35680) | |
| 44-694, gnl|oryCun1|scaffold_206134 (36461-35837) | |
| 44-694, gnl|oryCun1|scaffold_206134 (36502-35904) | |
| 44-694, gnl|oryCun1|scaffold_206134 (35455-36332) | |
| 44-694, gnl|panTro1|chr19 (2730999-2731642) | |
| 44-694, gnl|panTro1|chr20 (22432091-22433125) | |
| 44-694, gnl|panTro1|chr8_random (814367-813586) | |
| 44-694, gnl|panTro1|chrY (18837390-18836483) | |
| 44-694, gnl|panTro1|chrY (18836483-18837390) | |
| 44-694, gnl|rheMac2|chr16 (2496762-2497415) | |
| 44-694, gnl|rheMac2|chr19 (34141684-34142619) | |
| 44-694, gnl|rheMac2|chr19 (34142619-34141684) | |
| 44-694, gnl|rheMac2|chr3 (60333847-60334563) | |
| 44-694, gnl|rheMac2|chr3 (60335083-60334032) | |
| 44-694, gnl|rn3|chr10 (61965408-61966222) | |
| 44-694, gnl|rn3|chr10 (61966222-61965408) | |
| 44-694, gnl|rn3|chr10 (61966226-61965546) | |
| 44-694, gnl|rn3|chr10 (61966268-61965615) | |
| 44-694, gnl|rn3|chr10 (61965161-61966099) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-694, gnl|bosTau2|chr19 (18155518-18154898) | |
| 44-694, gnl|canFam2|chr9 (50063234-50062411) | |
| 44-694, gnl|canFam2|chr9 (50062411-50063234) | |
| 44-694, gnl|canFam2|chr9 (50062407-50063068) | |
| 44-694, gnl|canFam2|chr9 (50062363-50063028) | |
| 44-694, gnl|canFam2|chr9 (50063499-50062538) | |
| 44-694, gnl|dasNov1|scaffold_7324 (3206-2303) | |
| 44-694, gnl|dasNov1|scaffold_7324 (2303-3206) | |
| 44-694, gnl|dasNov1|scaffold_7324 (2301-3024) | |
| 44-694, gnl|dasNov1|scaffold_7324 (2262-2974) | |
| 44-694, gnl|dasNov1|scaffold_7324 (3470-2432) | |
| 44-694, gnl|echTel1|scaffold_324307 (48256-49028) | |
| 44-694, gnl|echTel1|scaffold_324307 (49028-48256) | |
| 44-694, gnl|echTel1|scaffold_324307 (49032-48440) | |
| 44-694, gnl|echTel1|scaffold_324307 (49074-48503) | |
| 44-694, gnl|echTel1|scaffold_324307 (48026-48899) | |
| 44-694, gnl|hg17|chr10 (135358267-135359039) | |
| 44-694, gnl|hg17|chr17 (2539407-2540038) | |
| 44-694, gnl|Hg17|chr17 (2539983-2539433) | |
| 44-694, gnl|hg17|chr7 (64175582-64176621) | |
| 44-694, gnl|hg17|chrY (18835056-18835973) | |
| 44-694, gnl|hg17|chrY (18170059-18170976) | |
| 44-694, gnl|mm7|chr11 (74751607-74752445) | |
| 44-694, gnl|mm7|chr11 (74752445-74751607) | |
| 44-694, gnl|mm7|chr11 (74752449-74751761) | |
| 44-694, gnl|mm7|chr11 (74752489-74751830) | |
| 44-694, gnl|mm7|chr11 (74751355-74752321) | |
| 44-694, gnl|Mm7|chr11 (74751822-74752421) | |
| 44-694, gnl|monDom2|scaffold_86 (3841401-3842075) | |
| 44-694, gnl|monDom2|scaffold_86 (3841378-3841994) | |
| 44-694, gnl|monDom2|scaffold_86 (3842453-3841544) | |
| 44-694, gnl|oryCun1|scaffold_206134 (35680-36457) | |
| 44-694, gnl|oryCun1|scaffold_206134 (36457-35680) | |
| 44-694, gnl|oryCun1|scaffold_206134 (36461-35837) | |
| 44-694, gnl|oryCun1|scaffold_206134 (36502-35904) | |
| 44-694, gnl|oryCun1|scaffold_206134 (35455-36332) | |
| 44-694, gnl|panTro1|chr19 (2730999-2731642) | |
| 44-694, gnl|panTro1|chr20 (22432091-22433125) | |
| 44-694, gnl|panTro1|chr8_random (814367-813586) | |
| 44-694, gnl|panTro1|chrY (18837390-18836483) | |
| 44-694, gnl|panTro1|chrY (18836483-18837390) | |
| 44-694, gnl|rheMac2|chr16 (2496762-2497415) | |
| 44-694, gnl|rheMac2|chr19 (34141684-34142619) | |
| 44-694, gnl|rheMac2|chr19 (34142619-34141684) | |
| 44-694, gnl|rheMac2|chr3 (60333847-60334563) | |
| 44-694, gnl|rheMac2|chr3 (60335083-60334032) | |
| 44-694, gnl|rn3|chr10 (61965408-61966222) | |
| 44-694, gnl|rn3|chr10 (61966222-61965408) | |
| 44-694, gnl|rn3|chr10 (61966226-61965546) | |
| 44-694, gnl|rn3|chr10 (61966268-61965615) | |
| 44-694, gnl|rn3|chr10 (61965161-61966099) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| hea (0.204499) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cly (0.120642) | |
| eru (0.120048) |