Non-Coding RNA Search

Ss1.1-Pig4-TMW8003G10.3

Sequence:


               
               GGCGGACGAGGCGCCGGGGGCCCCCATGGGCGGGTGTGTGGGCGCCCAGCACGACTCCTC
GGGCAGCCTCAACGAGAACTCGGAGGGCACCGGAGTTGCTTTAGGTCGTAACCAGCCTCT
GAAAAAAGAGAAACCCAAATGGAAAAGTGATTATCCCATGACAGATGGACAACTGCGCAG
CAAGAGAGACGAATTTTGGGATACTGCACCAGCTTTTGAAGGCCGTAAAGAGATTTGGGA
CGCCTTGAAGGCTGCAGCACATGCTTTTGAAAGCAATGATCATGAACTGGCCCAAGCAAT
CATTGATGGTGCGAACATAACATTACCGCACGGTGCACTTACAGAGTGCTATGATGAACT
GGGGAATAGATACCAGCTTCCAGTCTATTGCTTGGCACCACCAATCAACATGATAGAGGA
AAAGAGCGACATAGAGACTCTTGATATTCCTGACCCACCACCCAATTCTGGATATGAATC
TCAGCTCCGTTTGCGCCTTTCCACTGGCAAAGACCTCAAACTTGTGGTCCGCAGCACAGA
CACAGTGTACCACATGAAGAGGCGGCTACATGCAGCGGAAGGAGTGGAGCCGGCTAGTCA
GCGGTGGTTCTTTTCTGGCAGACCTCTCACCGACAAAATGAAGTTGGAAGAGCTAAAGAT
CCCAAAGGACTATGTTGTACAGGTTATAATGAGCCAACCTCTGCAAAGCCCGACACCAGT
TGAGAACTGAACTGGTCCTGTTGGCTGTCCCCAGCTCCCTCCCGCTCCTTTTTATTGTTG
TTATTGTTTCCTACTCTACGCGTGAAATTTATTTTCACTGCTCTGAATTCCGTATGAATG
GATTTAGTTCTGAGGAATTACCAGTGAAAAATTCCATCTGTGATGGAGACCAACAAAAAT
AATTAATAAAACACAAAGAGCCAGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGACGAGGCGCCGGGGGCCCCCATGGGCGGGTGTGTGGGCGCCCAGCACGACTCCTC
GGGCAGCCTCAACGAGAACTCGGAGGGCACCGGAGTTGCTTTAGGTCGTAACCAGCCTCT
GAAAAAAGAGAAACCCAAATGGAAAAGTGATTATCCCATGACAGATGGACAACTGCGCAG
CAAGAGAGACGAATTTTGGGATACTGCACCAGCTTTTGAAGGCCGTAAAGAGATTTGGGA
CGCCTTGAAGGCTGCAGCACATGCTTTTGAAAGCAATGATCATGAACTGGCCCAAGCAAT
CATTGATGGTGCGAACATAACATTACCGCACGGTGCACTTACAGAGTGCTATGATGAACT
GGGGAATAGATACCAGCTTCCAGTCTATTGCTTGGCACCACCAATCAACATGATAGAGGA
AAAGAGCGACATAGAGACTCTTGATATTCCTGACCCACCACCCAATTCTGGATATGAATC
TCAGCTCCGTTTGCGCCTTTCCACTGGCAAAGACCTCAAACTTGTGGTCCGCAGCACAGA
CACAGTGTACCACATGAAGAGGCGGCTACATGCAGCGGAAGGAGTGGAGCCGGCTAGTCA
GCGGTGGTTCTTTTCTGGCAGACCTCTCACCGACAAAATGAAGTTGGAAGAGCTAAAGAT
CCCAAAGGACTATGTTGTACAGGTTATAATGAGCCAACCTCTGCAAAGCCCGACACCAGT
TGAGAACTGAACTGGTCCTGTTGGCTGTCCCCAGCTCCCTCCCGCTCCTTTTTATTGTTG
TTATTGTTTCCTACTCTACGCGTGAAATTTATTTTCACTGCTCTGAATTCCGTATGAATG
GATTTAGTTCTGAGGAATTACCAGTGAAAAATTCCATCTGTGATGGAGACCAACAAAAAT
AATTAATAAAACACAAAGAGCCAGAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62751565|ref|NP_001015679.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62751565|ref|NP_001015679.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               805-924, + strand, RNAz p=0.972312

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               805-924, + strand, RNAz p=0.972312

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC019910, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC019910, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               332-924, gnl|bosTau2|chr20 (1466293-1466883)
               

               
               332-924, gnl|Hg17|chr5 (171571837-171571245)
               

               
               332-924, gnl|Mm7|chr11 (32468099-32468683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               332-924, gnl|bosTau2|chr20 (1466293-1466883)
               

               
               332-924, gnl|Hg17|chr5 (171571837-171571245)
               

               
               332-924, gnl|Mm7|chr11 (32468099-32468683)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               med (0.116252)

	332-924, gnl\|bosTau2\|chr20 (1466293-1466883)
	332-924, gnl\|Hg17\|chr5 (171571837-171571245)
	332-924, gnl\|Mm7\|chr11 (32468099-32468683)

	nep (0.183925)
	fhi (0.169578)
	csp (0.161186)
	spl (0.143184)
	pla (0.133672)
	med (0.116252)