Non-Coding RNA Search

Ss1.1-Pig4-TMW8003G11.3

Sequence:


               
               GATTGGTTTTGGTAGTGTTCAAGAAACTGTTCAAAGAAGAAAGAAAAGAAAACTCTTTCC
CTCGTTTTTCCCCCTCATTTTTTGATGGGAGGAAAATTCAAAACATTTTCATTGTTGTCC
TTGTTGTTAATAGCATAATGAGGGGTGGGAGGGGGTTAAGGGGGGCATAAGGAAAATGTC
ATGAATGATTTTTTTTCCCAGTCCTGCCATATGTAACATTGACTCTGTTACTGAAATTTT
ATAGTTAGATCATATTCAATTTACCTATTAAACTATGTTCTATTTACCAGTGGGATTTTC
TGCCATTGTTTTGCATTTCACTGTAAGAATAATAGAGTTCTCCTCTGCTTTCTTCAGAGG
ATGACCCTTTAACATAGCCTGTGATTTGAAGGTGAGCTGTAAGGATGGGACTAATTGACA
TGCATCAGTTTACAAAGACAGTCTTATCTTCTGAGAATGCGCCATCTTTTCCTCTAGATA
ATTATTTATTACATATAACTTGGTTCCTATAATTTGTTGGGTCTCAAAATTGGCTCAAGT
ATGCTGTTAATATTTATTCTGTATTGATAAAGTCTGTCTTGCCAATATGAGTAAATCCTC
CAATTAATATTTTCTTCTTTAGCATAGCAGTGTCATTTTTTTTGTGAAAATGGTTATCTG
TTTATTTATTATGATACTGAGTCATATATAAATTTTCAATAAAAGCAGAAACTTTCTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGGTTTTGGTAGTGTTCAAGAAACTGTTCAAAGAAGAAAGAAAAGAAAACTCTTTCC
CTCGTTTTTCCCCCTCATTTTTTGATGGGAGGAAAATTCAAAACATTTTCATTGTTGTCC
TTGTTGTTAATAGCATAATGAGGGGTGGGAGGGGGTTAAGGGGGGCATAAGGAAAATGTC
ATGAATGATTTTTTTTCCCAGTCCTGCCATATGTAACATTGACTCTGTTACTGAAATTTT
ATAGTTAGATCATATTCAATTTACCTATTAAACTATGTTCTATTTACCAGTGGGATTTTC
TGCCATTGTTTTGCATTTCACTGTAAGAATAATAGAGTTCTCCTCTGCTTTCTTCAGAGG
ATGACCCTTTAACATAGCCTGTGATTTGAAGGTGAGCTGTAAGGATGGGACTAATTGACA
TGCATCAGTTTACAAAGACAGTCTTATCTTCTGAGAATGCGCCATCTTTTCCTCTAGATA
ATTATTTATTACATATAACTTGGTTCCTATAATTTGTTGGGTCTCAAAATTGGCTCAAGT
ATGCTGTTAATATTTATTCTGTATTGATAAAGTCTGTCTTGCCAATATGAGTAAATCCTC
CAATTAATATTTTCTTCTTTAGCATAGCAGTGTCATTTTTTTTGTGAAAATGGTTATCTG
TTTATTTATTATGATACTGAGTCATATATAAATTTTCAATAAAAGCAGAAACTTTCTTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-149, + strand, RNAz p=0.729792

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-149, + strand, RNAz p=0.729792

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC067215, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC067215, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-720, gnl|bosTau2|chr11 (44449912-44450643)
               

               
               1-720, gnl|canFam2|chr10 (65976870-65977435)
               

               
               1-720, gnl|danRer3|chr17 (15409682-15409139)
               

               
               1-720, gnl|dasNov1|scaffold_6579 (55848-56401)
               

               
               1-720, gnl|echTel1|scaffold_314657 (142364-142894)
               

               
               1-720, gnl|hg17|chr2 (63184476-63185013)
               

               
               1-720, gnl|Hg17|chr2 (63184555-63185267)
               

               
               1-720, gnl|loxAfr1|scaffold_90166 (9969-9425)
               

               
               1-720, gnl|mm7|chr11 (21958623-21958089)
               

               
               1-720, gnl|Mm7|chr11 (21958541-21957840)
               

               
               1-720, gnl|monDom2|scaffold_1 (28278679-28279209)
               

               
               1-720, gnl|oryCun1|scaffold_192946 (13539-14069)
               

               
               1-720, gnl|panTro1|chr12 (65405120-65405658)
               

               
               1-720, gnl|rheMac2|chr13 (63223717-63224252)
               

               
               1-720, gnl|rn3|chr14 (102751178-102750651)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr11 (44449912-44450643)
               

               
               1-720, gnl|canFam2|chr10 (65976870-65977435)
               

               
               1-720, gnl|danRer3|chr17 (15409682-15409139)
               

               
               1-720, gnl|dasNov1|scaffold_6579 (55848-56401)
               

               
               1-720, gnl|echTel1|scaffold_314657 (142364-142894)
               

               
               1-720, gnl|hg17|chr2 (63184476-63185013)
               

               
               1-720, gnl|Hg17|chr2 (63184555-63185267)
               

               
               1-720, gnl|loxAfr1|scaffold_90166 (9969-9425)
               

               
               1-720, gnl|mm7|chr11 (21958623-21958089)
               

               
               1-720, gnl|Mm7|chr11 (21958541-21957840)
               

               
               1-720, gnl|monDom2|scaffold_1 (28278679-28279209)
               

               
               1-720, gnl|oryCun1|scaffold_192946 (13539-14069)
               

               
               1-720, gnl|panTro1|chr12 (65405120-65405658)
               

               
               1-720, gnl|rheMac2|chr13 (63223717-63224252)
               

               
               1-720, gnl|rn3|chr14 (102751178-102750651)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ova (0.258264)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.258264)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-720, gnl\|bosTau2\|chr11 (44449912-44450643)
	1-720, gnl\|canFam2\|chr10 (65976870-65977435)
	1-720, gnl\|danRer3\|chr17 (15409682-15409139)
	1-720, gnl\|dasNov1\|scaffold_6579 (55848-56401)
	1-720, gnl\|echTel1\|scaffold_314657 (142364-142894)
	1-720, gnl\|hg17\|chr2 (63184476-63185013)
	1-720, gnl\|Hg17\|chr2 (63184555-63185267)
	1-720, gnl\|loxAfr1\|scaffold_90166 (9969-9425)
	1-720, gnl\|mm7\|chr11 (21958623-21958089)
	1-720, gnl\|Mm7\|chr11 (21958541-21957840)
	1-720, gnl\|monDom2\|scaffold_1 (28278679-28279209)
	1-720, gnl\|oryCun1\|scaffold_192946 (13539-14069)
	1-720, gnl\|panTro1\|chr12 (65405120-65405658)
	1-720, gnl\|rheMac2\|chr13 (63223717-63224252)
	1-720, gnl\|rn3\|chr14 (102751178-102750651)

	ova (0.258264)
	sto (0.179824)
	rec (0.17307)
	ssp (0.13552)
	ste (0.135208)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)