Non-Coding RNA Search

Ss1.1-Pig4-TMW8003H21.3

Sequence:


               
               TTTTCCACTCAGGATATTTTTGTTGATTGTCTTCATGTGTATAACCTTACTGATTGCCAG
CCTCATCTGCCTTACTCTACCAGTATTTGCCGGCCGTTGGTTAATGTCCTTTTGGACGGG
GACTGCCAAAATCCATGAGCTCTACACAGCTGCTTGTGGCCTCTACGTTTGCTGGTTAAC
CATCAGGGCGGTGACGGTGCTGGTAGCTTGGATGCCACAGGGACGCAGAGTGATCTTTCA
GAAGGTTAAAGAGTGGTCCCTCATGATAATGAAGACCTTAATAGTTGCGGTTCTGCTCGC
TGGAGTTGTCCCGCTTCTTCTGGGGCTCCTGTTTGAGCTGGTTATTGTTGCTCCCCTGAG
GGTTCCCTTGGATCAAACTCCTCTTTTTTACCCATGGCAGGACTGGGCACTTGGAGTCCT
GCATGCCAAAATCATTGCAGCTATAACGTTGATGGGTCCTCAGTGGTGGTTGAAAACTGT
AATTGAGCAGGTTTACGCAAACGGCATCCGGAACATTGACCTTCACTATATCGTTCGGAA
ACTGGCAGCGCCAGTGATCTCTGTGCTCTTGCTTTCCCTGTGTGTACCTTACGTCATTGC
GTCTGGCATCGTTCCTCTACTAGGTGTTACTTCGGAAATGCAAAACTTGGTCCATCGGCG
GATTTATCCATTTTTACTGATGGTTGTGGTATTGATGGGAATCTTGTCCTTCCAGGTCCG
CCAGTTTAAGCGCCTTTATGAACATATTAAAAATGACAAGTACCTTGTGGGCCAACGCCT
TGTGAACTATGAACGGAAATCTGGCAAACAGGGCACCTCTCCGCCACCTCCACAGTCATC
CCAAGAATAAAGTGGTTGTCTCAACTACCTTGACCTTCCCCTTGCCTTTACGTGTCCTTT
TTTGTGGACTTCTCTCTTTGGAGATTTTTCCCAGTGATCTCTCAGCATTGTTTTTATTTT
AAATCTGTTGACTTGTGTTCTCGGCATCCAGAGAGCTGCCCTTCCTGCACCTTCTGACAT
CATTGCTGTCTGAGGTCTGTACATGTGTAAATAGAAGTTCCTGGATACCCTAAAACCTTG
GATTAAACAGAATGTGCATTGTACATCTTTAAACAAAATGTATATTAATTTATTAAATCT
AGTTGTCACTTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCACTCAGGATATTTTTGTTGATTGTCTTCATGTGTATAACCTTACTGATTGCCAG
CCTCATCTGCCTTACTCTACCAGTATTTGCCGGCCGTTGGTTAATGTCCTTTTGGACGGG
GACTGCCAAAATCCATGAGCTCTACACAGCTGCTTGTGGCCTCTACGTTTGCTGGTTAAC
CATCAGGGCGGTGACGGTGCTGGTAGCTTGGATGCCACAGGGACGCAGAGTGATCTTTCA
GAAGGTTAAAGAGTGGTCCCTCATGATAATGAAGACCTTAATAGTTGCGGTTCTGCTCGC
TGGAGTTGTCCCGCTTCTTCTGGGGCTCCTGTTTGAGCTGGTTATTGTTGCTCCCCTGAG
GGTTCCCTTGGATCAAACTCCTCTTTTTTACCCATGGCAGGACTGGGCACTTGGAGTCCT
GCATGCCAAAATCATTGCAGCTATAACGTTGATGGGTCCTCAGTGGTGGTTGAAAACTGT
AATTGAGCAGGTTTACGCAAACGGCATCCGGAACATTGACCTTCACTATATCGTTCGGAA
ACTGGCAGCGCCAGTGATCTCTGTGCTCTTGCTTTCCCTGTGTGTACCTTACGTCATTGC
GTCTGGCATCGTTCCTCTACTAGGTGTTACTTCGGAAATGCAAAACTTGGTCCATCGGCG
GATTTATCCATTTTTACTGATGGTTGTGGTATTGATGGGAATCTTGTCCTTCCAGGTCCG
CCAGTTTAAGCGCCTTTATGAACATATTAAAAATGACAAGTACCTTGTGGGCCAACGCCT
TGTGAACTATGAACGGAAATCTGGCAAACAGGGCACCTCTCCGCCACCTCCACAGTCATC
CCAAGAATAAAGTGGTTGTCTCAACTACCTTGACCTTCCCCTTGCCTTTACGTGTCCTTT
TTTGTGGACTTCTCTCTTTGGAGATTTTTCCCAGTGATCTCTCAGCATTGTTTTTATTTT
AAATCTGTTGACTTGTGTTCTCGGCATCCAGAGAGCTGCCCTTCCTGCACCTTCTGACAT
CATTGCTGTCTGAGGTCTGTACATGTGTAAATAGAAGTTCCTGGATACCCTAAAACCTTG
GATTAAACAGAATGTGCATTGTACATCTTTAAACAAAATGTATATTAATTTATTAAATCT
AGTTGTCACTTTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K2D5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K2D5_MOUSE

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-740, gnl|bosTau2|chr5 (28401555-28402260)
               

               
               1-740, gnl|Hg17|chr5 (10464637-10483121)
               

               
               1-740, gnl|Mm7|chr15 (31590422-31574076)
               


               
               65-268, gnl|bosTau2|chr20 (37704642-37704438)
               

               
               65-268, gnl|Hg17|chr5 (10468580-10468784)
               

               
               65-268, gnl|Mm7|chr15 (31583933-31583729)
               


               
               488-626, gnl|bosTau2|chr20 (37693994-37693856)
               

               
               488-626, gnl|Hg17|chr5 (10479499-10479637)
               

               
               488-626, gnl|Mm7|chr15 (31577504-31577366)
               


               
               757-1153, gnl|bosTau2|chr20 (37690128-37689719)
               

               
               757-1153, gnl|Hg17|chr5 (10486703-10487112)
               

               
               757-1153, gnl|Mm7|chr15 (31571397-31570991)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-740, gnl|bosTau2|chr5 (28401555-28402260)
               

               
               1-740, gnl|Hg17|chr5 (10464637-10483121)
               

               
               1-740, gnl|Mm7|chr15 (31590422-31574076)
               


               
               65-268, gnl|bosTau2|chr20 (37704642-37704438)
               

               
               65-268, gnl|Hg17|chr5 (10468580-10468784)
               

               
               65-268, gnl|Mm7|chr15 (31583933-31583729)
               


               
               488-626, gnl|bosTau2|chr20 (37693994-37693856)
               

               
               488-626, gnl|Hg17|chr5 (10479499-10479637)
               

               
               488-626, gnl|Mm7|chr15 (31577504-31577366)
               


               
               757-1153, gnl|bosTau2|chr20 (37690128-37689719)
               

               
               757-1153, gnl|Hg17|chr5 (10486703-10487112)
               

               
               757-1153, gnl|Mm7|chr15 (31571397-31570991)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               tes (0.831255)
               

               
               fat (0.442282)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               fat (0.442282)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-740, gnl\|bosTau2\|chr5 (28401555-28402260)
	1-740, gnl\|Hg17\|chr5 (10464637-10483121)
	1-740, gnl\|Mm7\|chr15 (31590422-31574076)

	65-268, gnl\|bosTau2\|chr20 (37704642-37704438)
	65-268, gnl\|Hg17\|chr5 (10468580-10468784)
	65-268, gnl\|Mm7\|chr15 (31583933-31583729)

	488-626, gnl\|bosTau2\|chr20 (37693994-37693856)
	488-626, gnl\|Hg17\|chr5 (10479499-10479637)
	488-626, gnl\|Mm7\|chr15 (31577504-31577366)

	757-1153, gnl\|bosTau2\|chr20 (37690128-37689719)
	757-1153, gnl\|Hg17\|chr5 (10486703-10487112)
	757-1153, gnl\|Mm7\|chr15 (31571397-31570991)

	tes (0.831255)
	fat (0.442282)
	elu (0.385356)
	bla (0.373042)
	sme (0.305437)
	cte (0.29274)
	cbe (0.239234)
	sto (0.179824)
	cut (0.169924)
	cli (0.152812)
	ski (0.146735)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	pla (0.133672)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	eep (0.122564)
	ecc (0.115035)
	spc (0.113366)