Non-Coding RNA Search

Ss1.1-Pig4-TMW8003I15.3

Sequence:


               
               AAGTTTACAGAGGAACCAAAATGATAGTAGGAGCATCTAATTAAAAGCATAGATTGTCAT
AGTTTATATAATACACAAAAAAGTAGGATCCCAGTCATAAATAAATACATCTGTTATTTT
ACTGAGACAGATTTGTAAAGAACAGGTTGTGAAATTAAGGCCACTAGGACATCTCTTTCA
TATTGATATGAAGTATATCATTTCTATTGATGGCAAACCTGTCCTATACCTTGGTTTTAG
ACTTTAGGTGTTCTTCAAAAGTGAATTTATGCCACATGCATGTGCATTGTATTTATAAAG
ATTATACATGTAGTTTCCCAGGGAGAAACTAAGAACTCGACAGCATAGACATGGATTGTT
TGGTGAGCGTGCTGTTGTGTGATACAGATTGAGAAACCTGAGGAGAACAGGAGGTGCTCT
TGGTTTTTCCAGTGGTTTCCCGAGTCTTCAGTACAAATACCCAGCACACATTCACTTTAT
GAACTTAAATGAGGATTAATGTATTCTAGACCATAAAGCTGCTATGGAATGATGAAGTAA
AAGTGTACCTTAGCGAGTTTTGGAAAACAAAACACTCAGTGCATCAGGAGGAAGGTGGCC
ACCCCAAAGCATGACTGGCACACTCCAAGGAGGTTTAGAACAAAGCCATGAGGGCCAGAG
GAGCCAGACACCTGGGCAGTGAGCCTGGCCAGCCGGCCATACAACCTGGCTGCACAGACA
GCCAAAATTAGAATATTATGGTCGTAGAACTCTGGGGTGGATGGTATTTGATGGTTTGAC
ATCTCCGAACTGCTAAAGTCGCATTTGCATTCTTGTTCACACAAACTCCTTGGCTCTTCT
AACAACCATGGTTCCAAACTTCATCACAGCTTAGATTGCTCAGCACTGAGGTAAACTTTG
TATTGTCATCCTAGTGTATGCTTTTAGTGTCTTATTGATTTTGTTGACACTGTATTTGGA
CCTGTCCTTGTAAATGTAGAGACATGTGTGGCTTCATGGGTAATTTACGAGTAAAAGATG
ACTTGACGTGACACCTGTATGAAAATGTAATGATTGAACTCACTGTGTACAGCACGTGAA
TTAAAATGTCTGCCTCTCAAAGACATTTCTTGATGCCTCCACTCAATAGATTCCAAATGT
ACTGGATATCCCTGTGTACATACATGTGTTAAATAAATCCGAATTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTTACAGAGGAACCAAAATGATAGTAGGAGCATCTAATTAAAAGCATAGATTGTCAT
AGTTTATATAATACACAAAAAAGTAGGATCCCAGTCATAAATAAATACATCTGTTATTTT
ACTGAGACAGATTTGTAAAGAACAGGTTGTGAAATTAAGGCCACTAGGACATCTCTTTCA
TATTGATATGAAGTATATCATTTCTATTGATGGCAAACCTGTCCTATACCTTGGTTTTAG
ACTTTAGGTGTTCTTCAAAAGTGAATTTATGCCACATGCATGTGCATTGTATTTATAAAG
ATTATACATGTAGTTTCCCAGGGAGAAACTAAGAACTCGACAGCATAGACATGGATTGTT
TGGTGAGCGTGCTGTTGTGTGATACAGATTGAGAAACCTGAGGAGAACAGGAGGTGCTCT
TGGTTTTTCCAGTGGTTTCCCGAGTCTTCAGTACAAATACCCAGCACACATTCACTTTAT
GAACTTAAATGAGGATTAATGTATTCTAGACCATAAAGCTGCTATGGAATGATGAAGTAA
AAGTGTACCTTAGCGAGTTTTGGAAAACAAAACACTCAGTGCATCAGGAGGAAGGTGGCC
ACCCCAAAGCATGACTGGCACACTCCAAGGAGGTTTAGAACAAAGCCATGAGGGCCAGAG
GAGCCAGACACCTGGGCAGTGAGCCTGGCCAGCCGGCCATACAACCTGGCTGCACAGACA
GCCAAAATTAGAATATTATGGTCGTAGAACTCTGGGGTGGATGGTATTTGATGGTTTGAC
ATCTCCGAACTGCTAAAGTCGCATTTGCATTCTTGTTCACACAAACTCCTTGGCTCTTCT
AACAACCATGGTTCCAAACTTCATCACAGCTTAGATTGCTCAGCACTGAGGTAAACTTTG
TATTGTCATCCTAGTGTATGCTTTTAGTGTCTTATTGATTTTGTTGACACTGTATTTGGA
CCTGTCCTTGTAAATGTAGAGACATGTGTGGCTTCATGGGTAATTTACGAGTAAAAGATG
ACTTGACGTGACACCTGTATGAAAATGTAATGATTGAACTCACTGTGTACAGCACGTGAA
TTAAAATGTCTGCCTCTCAAAGACATTTCTTGATGCCTCCACTCAATAGATTCCAAATGT
ACTGGATATCCCTGTGTACATACATGTGTTAAATAAATCCGAATTGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               782-937, - strand, RNAz p=0.736982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               782-937, - strand, RNAz p=0.736982

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-944, gnl|bosTau2|chr24 (42495393-42494428)
               

               
               1-944, gnl|Hg17|chr18 (52846816-52847737)
               

               
               1-944, gnl|Mm7|chr18 (64377032-64377896)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-944, gnl|bosTau2|chr24 (42495393-42494428)
               

               
               1-944, gnl|Hg17|chr18 (52846816-52847737)
               

               
               1-944, gnl|Mm7|chr18 (64377032-64377896)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               spc (0.226732)
               

               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)
               

               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	1-944, gnl\|bosTau2\|chr24 (42495393-42494428)
	1-944, gnl\|Hg17\|chr18 (52846816-52847737)
	1-944, gnl\|Mm7\|chr18 (64377032-64377896)

	spc (0.226732)
	nje (0.16592)
	lin (0.145603)
	ret (0.128733)
	thg (0.126791)
	pgl (0.118483)