Non-Coding RNA Search

Ss1.1-Pig4-TMW8003I23.5

Sequence:


               
               AGGCAGGCGCCCGGACCCTGGGCTGCAGCCGCGGCGACGCCGAGGACCGCGACGGTCAGC
CCCGGCTGCCTCCAGCCTGCTCGCCTCTCCTCTCCGTCCAGAGTCCGCCCGGGACGTGCG
CTCTCTGACCATCCTGCGCTCCGAGCAGCCTCATCCCCCATGGCGCCGTTCCTGCGACTC
TGCACTTGGCTGCTGGCGTTCAGCCCCGGGCTCCTGGCGACCGTGAGGGCAGAATGCAGC
CAGGACTGTGCGACGTGCAGCTACCGCCTGGCGCGCCCAACCGACCTCAACCCTCTGGCT
TGCACACTGGAATGTGAGGGGAAACTGCCTTCTCTTAAGACCTGGGAAACCTGCAAGGAG
CTTCTGCAGCTGTCCAAGCTGGAGCTCCCGCCCGATGGCACCAGCGCCCACCGAGAAAGT
GACAAACAGGAGGAAGGCCACCTGCTAGCCAAGAAGTACGGGGGCTTCATGAAGAGGTAT
GGGGGCTTCATGAAGAAAATGGATGAGCTGTATCCCGCGGAGCCGGAGGAAGAGGCCAAT
GGAGGTGAAATCCTCGGCAAGAGATACGGCGGCTTCATGAAGAAGGATGCAGAGGAAGAC
GACGGTCTGGGCAATTCCTCCGACCTGCTCAAGGAGCTGCTGCGAGCGGGGGACCACGGA
GACGGGAGCCTGCACCAGGAAGGCAGTGAGGACGAAGAGGTGAGCAAGCGGTACGGCGGC
TTCATGAGAGGCCTCAAGAGAAGCCCCCAACTGGAAGGCGAAGCCAAGGAGCTGCAGAAG
CGGTACGGGGGCTTCATGCGGAGGGTGGGCCGCCCGGAGTGGTGGATGGACTATCAGAAA
AGGTACGGTGGCTTCCTCAAGCGCTTTGCCGATTCCCTGCCCTCGGACGAAGAGGGTGAA
GGCTACTCAAAGGAGGTTCCCGAGATGGAGAAAAGATATGGCGGATTTATGAGATTCTGA
TCCCCTTTCCCAGCAGGGAGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCAGGCGCCCGGACCCTGGGCTGCAGCCGCGGCGACGCCGAGGACCGCGACGGTCAGC
CCCGGCTGCCTCCAGCCTGCTCGCCTCTCCTCTCCGTCCAGAGTCCGCCCGGGACGTGCG
CTCTCTGACCATCCTGCGCTCCGAGCAGCCTCATCCCCCATGGCGCCGTTCCTGCGACTC
TGCACTTGGCTGCTGGCGTTCAGCCCCGGGCTCCTGGCGACCGTGAGGGCAGAATGCAGC
CAGGACTGTGCGACGTGCAGCTACCGCCTGGCGCGCCCAACCGACCTCAACCCTCTGGCT
TGCACACTGGAATGTGAGGGGAAACTGCCTTCTCTTAAGACCTGGGAAACCTGCAAGGAG
CTTCTGCAGCTGTCCAAGCTGGAGCTCCCGCCCGATGGCACCAGCGCCCACCGAGAAAGT
GACAAACAGGAGGAAGGCCACCTGCTAGCCAAGAAGTACGGGGGCTTCATGAAGAGGTAT
GGGGGCTTCATGAAGAAAATGGATGAGCTGTATCCCGCGGAGCCGGAGGAAGAGGCCAAT
GGAGGTGAAATCCTCGGCAAGAGATACGGCGGCTTCATGAAGAAGGATGCAGAGGAAGAC
GACGGTCTGGGCAATTCCTCCGACCTGCTCAAGGAGCTGCTGCGAGCGGGGGACCACGGA
GACGGGAGCCTGCACCAGGAAGGCAGTGAGGACGAAGAGGTGAGCAAGCGGTACGGCGGC
TTCATGAGAGGCCTCAAGAGAAGCCCCCAACTGGAAGGCGAAGCCAAGGAGCTGCAGAAG
CGGTACGGGGGCTTCATGCGGAGGGTGGGCCGCCCGGAGTGGTGGATGGACTATCAGAAA
AGGTACGGTGGCTTCCTCAAGCGCTTTGCCGATTCCCTGCCCTCGGACGAAGAGGGTGAA
GGCTACTCAAAGGAGGTTCCCGAGATGGAGAAAAGATATGGCGGATTTATGAGATTCTGA
TCCCCTTTCCCAGCAGGGAGCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PENK_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PENK_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               412-571, - strand, RNAz p=0.999016
               

               
               689-845, + strand, RNAz p=0.997734

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               412-571, - strand, RNAz p=0.999016
               

               
               689-845, + strand, RNAz p=0.997734

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               292-979, gnl|bosTau2|chr14 (13145153-13144475)
               

               
               292-979, gnl|Hg17|chr8 (57517056-57516366)
               

               
               292-979, gnl|Mm7|chr4 (4061660-4060967)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               292-979, gnl|bosTau2|chr14 (13145153-13144475)
               

               
               292-979, gnl|Hg17|chr8 (57517056-57516366)
               

               
               292-979, gnl|Mm7|chr4 (4061660-4060967)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eep (0.61282)
               

               
               eje (0.197668)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.61282)
               

               
               eje (0.197668)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	412-571, - strand, RNAz p=0.999016
	689-845, + strand, RNAz p=0.997734

	292-979, gnl\|bosTau2\|chr14 (13145153-13144475)
	292-979, gnl\|Hg17\|chr8 (57517056-57516366)
	292-979, gnl\|Mm7\|chr4 (4061660-4060967)

	eep (0.61282)
	eje (0.197668)
	hyp (0.142837)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)
	jca (0.11396)