Non-Coding RNA Search

Ss1.1-Pig4-TMW8003J19.3

Sequence:


               
               GGCGTGTCAGGCTCCTGCACCACCAAGACCTGCTGGACCACACTGCCGCAGTTCCGAGAG
CTGGGCTACGTGCTCAAGGACAAGTACAACGAGGCTGTCCACGTGGAGCCCGTGCGCGCC
AGCCGCAACAAGCGGCCCACCTTCCTGAAGATCAAGAAGCCGCTGTCCTACCGCAAGCCC
ATGGACACCGACCTGGTGTACATCGAGAAGTCGCCCAACTACTGCGAGGAGGACCCGGTG
ACAGGCAGTGTGGGCACACAGGGCCGCGCCTGCAACAAGACGGCCCCCCAGGCCAGTGGC
TGTGACCTCATGTGCTGCGGCCGCGGCTACAACACCCACCAGTATGCCCGCGTGTGGCAG
TGCAACTGCAAGTTCCACTGGTGCTGCTACGTCAAATGCAACACGTGCAGCGAGCGCACG
GAGGTCTATACGTGCAAGTGATGGCGGGGTCACATGGCCCCGCCAGCCACACACAAACGG
CAGGAGGACTGGACGCTTTCCATGCTGCAGTCATGGCTCAGACCTTCACAGGGAGCCCCA
GCGATGCTGAGCTTGTCTTGTCTGCTGTGGGGGCGCCTGTGGGGGCACTTCTCCAGGGCC
CCAAGTCATCCATGCTACACCCAGTGCCGCTCTGCCGGGCCCACACACCGCCCAGGACCC
TCCTCGGCTGAGCAGAGCCTTCGCACCAGAAACTCTGGACCCTGGGCCTCAACATAGCAA
TATTTAACAATTTATTCTGATAAAAAATAATATTAATTTATTTAATTAAAAAGAACCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGTGTCAGGCTCCTGCACCACCAAGACCTGCTGGACCACACTGCCGCAGTTCCGAGAG
CTGGGCTACGTGCTCAAGGACAAGTACAACGAGGCTGTCCACGTGGAGCCCGTGCGCGCC
AGCCGCAACAAGCGGCCCACCTTCCTGAAGATCAAGAAGCCGCTGTCCTACCGCAAGCCC
ATGGACACCGACCTGGTGTACATCGAGAAGTCGCCCAACTACTGCGAGGAGGACCCGGTG
ACAGGCAGTGTGGGCACACAGGGCCGCGCCTGCAACAAGACGGCCCCCCAGGCCAGTGGC
TGTGACCTCATGTGCTGCGGCCGCGGCTACAACACCCACCAGTATGCCCGCGTGTGGCAG
TGCAACTGCAAGTTCCACTGGTGCTGCTACGTCAAATGCAACACGTGCAGCGAGCGCACG
GAGGTCTATACGTGCAAGTGATGGCGGGGTCACATGGCCCCGCCAGCCACACACAAACGG
CAGGAGGACTGGACGCTTTCCATGCTGCAGTCATGGCTCAGACCTTCACAGGGAGCCCCA
GCGATGCTGAGCTTGTCTTGTCTGCTGTGGGGGCGCCTGTGGGGGCACTTCTCCAGGGCC
CCAAGTCATCCATGCTACACCCAGTGCCGCTCTGCCGGGCCCACACACCGCCCAGGACCC
TCCTCGGCTGAGCAGAGCCTTCGCACCAGAAACTCTGGACCCTGGGCCTCAACATAGCAA
TATTTAACAATTTATTCTGATAAAAAATAATATTAATTTATTTAATTAAAAAGAACCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24210646|gb|AAN51978.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24210646|gb|AAN51978.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-441, gnl|bosTau2|chr5 (74262986-74263426)
               

               
               1-441, gnl|Hg17|chr22 (44639713-44639273)
               

               
               1-441, gnl|Mm7|chr15 (85620150-85619710)
               


               
               5-439, gnl|bosTau2|chr19 (41313556-41313122)
               

               
               5-439, gnl|Hg17|chr17 (42201291-42200857)
               

               
               5-439, gnl|Mm7|chr11 (103921365-103921799)
               


               
               536-780, gnl|bosTau2|chr26 (14279688-14279438)
               

               
               536-780, gnl|Hg17|chr3 (13835356-13835087)
               

               
               536-780, gnl|Mm7|chr6 (91448275-91447999)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-441, gnl|bosTau2|chr5 (74262986-74263426)
               

               
               1-441, gnl|Hg17|chr22 (44639713-44639273)
               

               
               1-441, gnl|Mm7|chr15 (85620150-85619710)
               


               
               5-439, gnl|bosTau2|chr19 (41313556-41313122)
               

               
               5-439, gnl|Hg17|chr17 (42201291-42200857)
               

               
               5-439, gnl|Mm7|chr11 (103921365-103921799)
               


               
               536-780, gnl|bosTau2|chr26 (14279688-14279438)
               

               
               536-780, gnl|Hg17|chr3 (13835356-13835087)
               

               
               536-780, gnl|Mm7|chr6 (91448275-91447999)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               pla (0.133672)

	1-441, gnl\|bosTau2\|chr5 (74262986-74263426)
	1-441, gnl\|Hg17\|chr22 (44639713-44639273)
	1-441, gnl\|Mm7\|chr15 (85620150-85619710)

	5-439, gnl\|bosTau2\|chr19 (41313556-41313122)
	5-439, gnl\|Hg17\|chr17 (42201291-42200857)
	5-439, gnl\|Mm7\|chr11 (103921365-103921799)

	536-780, gnl\|bosTau2\|chr26 (14279688-14279438)
	536-780, gnl\|Hg17\|chr3 (13835356-13835087)
	536-780, gnl\|Mm7\|chr6 (91448275-91447999)