Ss1.1-Pig4-TMW8003L12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGATCCAGGCCGGCCGAGCCCAGGATGCTTTGACCGTATGTGAGGAGCTCCTGAGCC GCACATCATCGCTGCTTCCCAAGAGGCCCCGGCTCTGGGAAGATGCCAGGAAAGGAACCA AAGAGTCACCACACTGCTCACCCTGGATCTCTGCCATCTACCTGCTTCAGGGCCAAGCTT GGGTGCAACTGGGGGCCCAAAAGGAGGCAGTTAGTGAATTTAGCCGGTGCCTTGAGCTGC TCTTCCAGGTCACACCCAAGGATAAAGAACCAGGTGATTTAGACGGGCCTGCTTCCAGCT GTGAGCATGGGTGTACGTCAGATGTGGTGCTACAACAGCTTCGGGCAGCTGCCCTGATTA GTCGTGGACTGGAATGGGTGGCCGGTGGCCAGGATAACAAAGCCCTACAAGACTTCCTCC TCAGTGTGCAGGTGTGCCCAGGTAATCAAGACGCTTCCTTTCACCTGCTTCAGACTCTAA GGAGGCTGGATCGGAGGGATGAGGCCATTGCTTTCTGGCAGAGGCTAGAAGCCCAAACTG ACCTGCCACAAGAGAATGCTACATGGTCTCTCCCCCTGTACCTAGAAACCTATTTGGACT GGATCCGTCCCCCTGACCGTGAAGCCCTTCTTGAGGAATTTCGGACATCTCTGCTCTAGA CCTGTGACCTGAAGGTGCTATGTTTCCAAGAACCTGATCTTGGGCTTCAGTGAGCCACCT GTCAGGAGGGCTTTCTGCTAATACACTCCTTGGGGAGTGTGGCTAGAGCTGACCATTCCA ATATAAGTCTGACATTAGAGAGGTTGGTGGTAGTCCTGCAAAATTTGTTCTAGTTACTGG TGTTCTGGTTCCAGAAAAAGCCCCTCTTCCAACAACAAGGCACTGACTTTATTGATAGTA CCTTTTTTTCCTGTTTACCTTTTTATGTTTTGAATAAAATTTGATATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGATCCAGGCCGGCCGAGCCCAGGATGCTTTGACCGTATGTGAGGAGCTCCTGAGCC GCACATCATCGCTGCTTCCCAAGAGGCCCCGGCTCTGGGAAGATGCCAGGAAAGGAACCA AAGAGTCACCACACTGCTCACCCTGGATCTCTGCCATCTACCTGCTTCAGGGCCAAGCTT GGGTGCAACTGGGGGCCCAAAAGGAGGCAGTTAGTGAATTTAGCCGGTGCCTTGAGCTGC TCTTCCAGGTCACACCCAAGGATAAAGAACCAGGTGATTTAGACGGGCCTGCTTCCAGCT GTGAGCATGGGTGTACGTCAGATGTGGTGCTACAACAGCTTCGGGCAGCTGCCCTGATTA GTCGTGGACTGGAATGGGTGGCCGGTGGCCAGGATAACAAAGCCCTACAAGACTTCCTCC TCAGTGTGCAGGTGTGCCCAGGTAATCAAGACGCTTCCTTTCACCTGCTTCAGACTCTAA GGAGGCTGGATCGGAGGGATGAGGCCATTGCTTTCTGGCAGAGGCTAGAAGCCCAAACTG ACCTGCCACAAGAGAATGCTACATGGTCTCTCCCCCTGTACCTAGAAACCTATTTGGACT GGATCCGTCCCCCTGACCGTGAAGCCCTTCTTGAGGAATTTCGGACATCTCTGCTCTAGA CCTGTGACCTGAAGGTGCTATGTTTCCAAGAACCTGATCTTGGGCTTCAGTGAGCCACCT GTCAGGAGGGCTTTCTGCTAATACACTCCTTGGGGAGTGTGGCTAGAGCTGACCATTCCA ATATAAGTCTGACATTAGAGAGGTTGGTGGTAGTCCTGCAAAATTTGTTCTAGTTACTGG TGTTCTGGTTCCAGAAAAAGCCCCTCTTCCAACAACAAGGCACTGACTTTATTGATAGTA CCTTTTTTTCCTGTTTACCTTTTTATGTTTTGAATAAAATTTGATATC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 685-781, + strand, RNAz p=0.828285 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 685-781, + strand, RNAz p=0.828285 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004629, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 4-236, gnl|bosTau2|chr8 (27868347-27868115) | |
| 4-236, gnl|canFam2|chr11 (54684503-54684835) | |
| 4-236, gnl|dasNov1|scaffold_21603 (5378-5046) | |
| 4-236, gnl|echTel1|scaffold_297718 (6501-6820) | |
| 4-236, gnl|fr1|chrUn (197881345-197881677) | |
| 4-236, gnl|hg17|chr9 (35065449-35065769) | |
| 4-236, gnl|Hg17|chr9 (35065684-35065456) | |
| 4-236, gnl|loxAfr1|scaffold_32330 (2509-2820) | |
| 4-236, gnl|mm7|chr4 (43018542-43018865) | |
| 4-236, gnl|Mm7|chr4 (43018780-43018548) | |
| 4-236, gnl|monDom2|scaffold_17 (46850103-46849778) | |
| 4-236, gnl|oryCun1|scaffold_210675 (69207-68884) | |
| 4-236, gnl|panTro1|chr11 (35621150-35621470) | |
| 4-236, gnl|rheMac2|chr15 (42478761-42478441) | |
| 4-236, gnl|rn3|chr5 (59496390-59496713) | |
| 285-444, gnl|bosTau2|chr8 (27867759-27867600) | |
| 285-444, gnl|canFam2|chr11 (54683740-54684237) | |
| 285-444, gnl|dasNov1|scaffold_21603 (6159-5648) | |
| 285-444, gnl|echTel1|scaffold_297718 (5463-5904) | |
| 285-444, gnl|hg17|chr9 (35064685-35065180) | |
| 285-444, gnl|Hg17|chr9 (35065080-35064921) | |
| 285-444, gnl|loxAfr1|scaffold_32330 (1754-2249) | |
| 285-444, gnl|mm7|chr4 (43017371-43017861) | |
| 285-444, gnl|Mm7|chr4 (43017753-43017594) | |
| 285-444, gnl|monDom2|scaffold_17 (46851305-46850803) | |
| 285-444, gnl|oryCun1|scaffold_210675 (69962-69480) | |
| 285-444, gnl|panTro1|chr11 (35620393-35620881) | |
| 285-444, gnl|rheMac2|chr15 (42479498-42479030) | |
| 285-444, gnl|rn3|chr5 (59495399-59495852) | |
| 565-948, gnl|bosTau2|chr8 (27866895-27866531) | |
| 565-948, gnl|Hg17|chr9 (35064214-35063838) | |
| 565-948, gnl|Mm7|chr4 (43016907-43016512) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-236, gnl|bosTau2|chr8 (27868347-27868115) | |
| 4-236, gnl|canFam2|chr11 (54684503-54684835) | |
| 4-236, gnl|dasNov1|scaffold_21603 (5378-5046) | |
| 4-236, gnl|echTel1|scaffold_297718 (6501-6820) | |
| 4-236, gnl|fr1|chrUn (197881345-197881677) | |
| 4-236, gnl|hg17|chr9 (35065449-35065769) | |
| 4-236, gnl|Hg17|chr9 (35065684-35065456) | |
| 4-236, gnl|loxAfr1|scaffold_32330 (2509-2820) | |
| 4-236, gnl|mm7|chr4 (43018542-43018865) | |
| 4-236, gnl|Mm7|chr4 (43018780-43018548) | |
| 4-236, gnl|monDom2|scaffold_17 (46850103-46849778) | |
| 4-236, gnl|oryCun1|scaffold_210675 (69207-68884) | |
| 4-236, gnl|panTro1|chr11 (35621150-35621470) | |
| 4-236, gnl|rheMac2|chr15 (42478761-42478441) | |
| 4-236, gnl|rn3|chr5 (59496390-59496713) | |
| 285-444, gnl|bosTau2|chr8 (27867759-27867600) | |
| 285-444, gnl|canFam2|chr11 (54683740-54684237) | |
| 285-444, gnl|dasNov1|scaffold_21603 (6159-5648) | |
| 285-444, gnl|echTel1|scaffold_297718 (5463-5904) | |
| 285-444, gnl|hg17|chr9 (35064685-35065180) | |
| 285-444, gnl|Hg17|chr9 (35065080-35064921) | |
| 285-444, gnl|loxAfr1|scaffold_32330 (1754-2249) | |
| 285-444, gnl|mm7|chr4 (43017371-43017861) | |
| 285-444, gnl|Mm7|chr4 (43017753-43017594) | |
| 285-444, gnl|monDom2|scaffold_17 (46851305-46850803) | |
| 285-444, gnl|oryCun1|scaffold_210675 (69962-69480) | |
| 285-444, gnl|panTro1|chr11 (35620393-35620881) | |
| 285-444, gnl|rheMac2|chr15 (42479498-42479030) | |
| 285-444, gnl|rn3|chr5 (59495399-59495852) | |
| 565-948, gnl|bosTau2|chr8 (27866895-27866531) | |
| 565-948, gnl|Hg17|chr9 (35064214-35063838) | |
| 565-948, gnl|Mm7|chr4 (43016907-43016512) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cbr (0.383926) | |
| fce (0.271592) | |
| hea (0.204499) | |
| ton (0.1755) | |
| eye (0.170503) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| cst (0.140036) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.383926) | |
| fce (0.271592) | |
| hea (0.204499) | |
| ton (0.1755) | |
| eye (0.170503) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| cst (0.140036) |