Non-Coding RNA Search

Ss1.1-Pig4-TMW8003L14.3

Sequence:


               
               AACCCTTTGTATGTAGTGTTTGTGGAAAAGGCTTCACCATGAAGGGTGATCTCATTATAC
ATCAGCGAACTCATACTGCAGAGAAACCATATATATGCAGTGACTGTGGGAAAGGCTTCA
CTGTGAAGAGCC------------------------------------------------
GCAGTGAATGTGGGAAAGGCTTTCCAGCCAAGATCCGGCTGATTGGACATCAGCGAATTC
ACACGGGAGAAAAGCCCTATATATGCAGTGAATGTGGAAAAGGCTTCACGGAGAAGAGTC
ATCTCAATGTACACCGGCGCACTCACACAGGAGAGAAACCCTATGTATGCAGTACATGTG
GCAAAGGCTTCAGTGGGAAAAGCACGCTTGTTGCACACCTGAGAACTCATACTGGAGAGA
AACCCTATGTATGTAATGAGTGTGGCAAGGGCTTCACCAAGAAGAGTACTCTGGGTACAC
ATCAGCAAACTCACATTAGAGAGAAACCGTACAAATGCAAAGAGTGTGATAAAGCCTTTA
GGAAGAAGACATGCCTCATGCAACATCAGAGGTTTCACTCAGGAAAGACTTCTTTGCTTG
TACTGAATGCAGACAATTCTCTTTGTGCAAAAATGATCTTATTACCCATCAGAGAATTCA
CACGGGAGAGAAGCCATATGAATGCAGTGAATGTGGGAAAGCCATCAGCACAAAGTCAGG
GCTCAATGTTCATCAAAGAAAACATACAGGAGAGAGGCTCTATGGATGCAGTGAATGTGG
GAAAGCTTTAGCCCACTTGTCAATACTCATTAAACATAAAAGAATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCTTTGTATGTAGTGTTTGTGGAAAAGGCTTCACCATGAAGGGTGATCTCATTATAC
ATCAGCGAACTCATACTGCAGAGAAACCATATATATGCAGTGACTGTGGGAAAGGCTTCA
CTGTGAAGAGCC------------------------------------------------
GCAGTGAATGTGGGAAAGGCTTTCCAGCCAAGATCCGGCTGATTGGACATCAGCGAATTC
ACACGGGAGAAAAGCCCTATATATGCAGTGAATGTGGAAAAGGCTTCACGGAGAAGAGTC
ATCTCAATGTACACCGGCGCACTCACACAGGAGAGAAACCCTATGTATGCAGTACATGTG
GCAAAGGCTTCAGTGGGAAAAGCACGCTTGTTGCACACCTGAGAACTCATACTGGAGAGA
AACCCTATGTATGTAATGAGTGTGGCAAGGGCTTCACCAAGAAGAGTACTCTGGGTACAC
ATCAGCAAACTCACATTAGAGAGAAACCGTACAAATGCAAAGAGTGTGATAAAGCCTTTA
GGAAGAAGACATGCCTCATGCAACATCAGAGGTTTCACTCAGGAAAGACTTCTTTGCTTG
TACTGAATGCAGACAATTCTCTTTGTGCAAAAATGATCTTATTACCCATCAGAGAATTCA
CACGGGAGAGAAGCCATATGAATGCAGTGAATGTGGGAAAGCCATCAGCACAAAGTCAGG
GCTCAATGTTCATCAAAGAAAACATACAGGAGAGAGGCTCTATGGATGCAGTGAATGTGG
GAAAGCTTTAGCCCACTTGTCAATACTCATTAAACATAAAAGAATTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               181-292, - strand, RNAz p=0.999745

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-292, - strand, RNAz p=0.999745

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               133-707, gnl|bosTau2|chr10 (8996578-8996003)
               

               
               133-707, gnl|Hg17|chr19 (42818383-42817755)
               

               
               133-707, gnl|Mm7|chr2 (127310009-127309518)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-707, gnl|bosTau2|chr10 (8996578-8996003)
               

               
               133-707, gnl|Hg17|chr19 (42818383-42817755)
               

               
               133-707, gnl|Mm7|chr2 (127310009-127309518)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	133-707, gnl\|bosTau2\|chr10 (8996578-8996003)
	133-707, gnl\|Hg17\|chr19 (42818383-42817755)
	133-707, gnl\|Mm7\|chr2 (127310009-127309518)