Non-Coding RNA Search

Ss1.1-Pig4-TMW8003N08.3

Sequence:


               
               GGGGAATTGAGTTGGGGGTTATTTTCTAATTTTTTTTGTACATTTGGAACAGTGACAATA
AATGAGCCCCCTTTATACTGTCTTTTCTGCATGAGGTGGGGAACCAAAGGTTCTCTAGAC
CAGCACTGTCCAACAGAACTTTACACAATAATGTTCTACAATCGTTCATTATTTAATACC
TGTAACTACTGAGCATTTGATATGTAGCCAGAACCATTTAAATTTTCTTTAGTCACATGT
AGGTCTCGTGACTACCATAGTAGTCAGTATAGCTGTACTGTACTGGGTCCATTATTATCA
CCTGTAAATCCTCTCCAAATTTAATCTATCTTTAGTATTTATTGCCCAGGCCCCTAGCAT
GATGATTGGAAGAGGTGGGACTTTTCTTATGGGCTGTTTCTGGCCTGCCTACATCCTAAG
GACAGGTTGCTGTTTATCCTTGCTGTGCAGCTGAGCACGTTCATACCTCCCAAGGGCTAT
TCTATGCCCAGAAATGCCCTTGTATGGGTGTGGCATCAGTTTTGGGGTTCCATCCAAGTT
GTTTCAGGAATTGCTGACACTACTGACTGCAGCTCTCTCTCCCAAAGCCCAGGGTGTGGC
CATTAACTTCTCCCTCTAGGGGAACTTGGAAAGGCAGTATATGATTTCTGGTTGTGAGTG
AAACATCCACTTTCTCATGCAACAGTGAAGAACTAAAAGGATAGTACTGGTGTAATCTTT
GGTTCAATGAACCATTTTCCTCTTACTTTTTGTGGGTAAATACAAATCCTATCTATGGTT
GCAGTTTTCAGTTACTGGATAATTCCAGATAGGAGCCCTACTTATAGGTGACCTTCAGTC
GCCACCTTTAGAAAAGGAGAACTTTATTCCTGCTATAATCTCTAGTTGCCAATTATAAGA
GATTTGGTGGAGCTTCATGCTAAAGTATTTATCAGGATCATCCACACTGCTTTGAAAAAG
TAAAGATGTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAATTGAGTTGGGGGTTATTTTCTAATTTTTTTTGTACATTTGGAACAGTGACAATA
AATGAGCCCCCTTTATACTGTCTTTTCTGCATGAGGTGGGGAACCAAAGGTTCTCTAGAC
CAGCACTGTCCAACAGAACTTTACACAATAATGTTCTACAATCGTTCATTATTTAATACC
TGTAACTACTGAGCATTTGATATGTAGCCAGAACCATTTAAATTTTCTTTAGTCACATGT
AGGTCTCGTGACTACCATAGTAGTCAGTATAGCTGTACTGTACTGGGTCCATTATTATCA
CCTGTAAATCCTCTCCAAATTTAATCTATCTTTAGTATTTATTGCCCAGGCCCCTAGCAT
GATGATTGGAAGAGGTGGGACTTTTCTTATGGGCTGTTTCTGGCCTGCCTACATCCTAAG
GACAGGTTGCTGTTTATCCTTGCTGTGCAGCTGAGCACGTTCATACCTCCCAAGGGCTAT
TCTATGCCCAGAAATGCCCTTGTATGGGTGTGGCATCAGTTTTGGGGTTCCATCCAAGTT
GTTTCAGGAATTGCTGACACTACTGACTGCAGCTCTCTCTCCCAAAGCCCAGGGTGTGGC
CATTAACTTCTCCCTCTAGGGGAACTTGGAAAGGCAGTATATGATTTCTGGTTGTGAGTG
AAACATCCACTTTCTCATGCAACAGTGAAGAACTAAAAGGATAGTACTGGTGTAATCTTT
GGTTCAATGAACCATTTTCCTCTTACTTTTTGTGGGTAAATACAAATCCTATCTATGGTT
GCAGTTTTCAGTTACTGGATAATTCCAGATAGGAGCCCTACTTATAGGTGACCTTCAGTC
GCCACCTTTAGAAAAGGAGAACTTTATTCCTGCTATAATCTCTAGTTGCCAATTATAAGA
GATTTGGTGGAGCTTCATGCTAAAGTATTTATCAGGATCATCCACACTGCTTTGAAAAAG
TAAAGATGTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               710-860, - strand, RNAz p=0.998581

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               710-860, - strand, RNAz p=0.998581

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               728-819, 146689 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE237406.1|), 
blast E-value=0.00000000000001, identity=88.04% 
               

               
               728-820, RKT603019863.R1 CSEQFXN33 liver Bos taurus cDNA, mRNA sequence 
(gb|CB165978.1|), blast E-value=0.000000000000003, identity=88.17% 
               

               
               710-860, UMC-pd6end1-007-f07 Endometrium gilt D6 of estrous cycle pd6end Sus 
(gb|CO992148.1|), blast E-value=0, identity=100%

Similar Transcript(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               728-819, 146689 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE237406.1|), 
blast E-value=0.00000000000001, identity=88.04% 
               

               
               728-820, RKT603019863.R1 CSEQFXN33 liver Bos taurus cDNA, mRNA sequence 
(gb|CB165978.1|), blast E-value=0.000000000000003, identity=88.17% 
               

               
               710-860, UMC-pd6end1-007-f07 Endometrium gilt D6 of estrous cycle pd6end Sus 
(gb|CO992148.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-860, gnl|bosTau2|chr21 (34499689-34500550)
               

               
               1-860, gnl|Hg17|chr15 (41850959-41851823)
               

               
               1-860, gnl|Mm7|chr2 (121178754-121179585)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-860, gnl|bosTau2|chr21 (34499689-34500550)
               

               
               1-860, gnl|Hg17|chr15 (41850959-41851823)
               

               
               1-860, gnl|Mm7|chr2 (121178754-121179585)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	728-819, 146689 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE237406.1\|), blast E-value=0.00000000000001, identity=88.04%
	728-820, RKT603019863.R1 CSEQFXN33 liver Bos taurus cDNA, mRNA sequence (gb\|CB165978.1\|), blast E-value=0.000000000000003, identity=88.17%
	710-860, UMC-pd6end1-007-f07 Endometrium gilt D6 of estrous cycle pd6end Sus (gb\|CO992148.1\|), blast E-value=0, identity=100%

	1-860, gnl\|bosTau2\|chr21 (34499689-34500550)
	1-860, gnl\|Hg17\|chr15 (41850959-41851823)
	1-860, gnl\|Mm7\|chr2 (121178754-121179585)

	fcc (0.197785)
	duo (0.172801)
	ste (0.135208)
	cov (0.132153)
	ova (0.129132)
	bla (0.124347)
	eru (0.120048)