Non-Coding RNA Search

Ss1.1-Pig4-TMW8003N15.3

Sequence:


               
               TAATCAAGGAAACACAGGCTCCAGCATATCTCATAGATCTGATGCATGATAAAAATAATG
AAATTCGAAAAGTCTGTGATAATACATTAGATATTATAGCGGAATATGATGAAGAATGGG
CTAAGAAAATTCAGAGTGAAAAGTTTCGCTGGCATAACTCTCAGTGGCTGGAGATGGTAG
AGAGTCGTCAGATGGATGAGAGTGAGCAGTACTTGTATGGTGATGATCGAATTGAGCCAT
ACATCCATGAAGGAGATATTCTCGAGAGACCTGACCTTTTCTACAGCTCAGATGGATTAG
TTGCCTCTGAAGGAGCCATCAGTCCAGATTTCTTCAATGATTATCACCTTCAGAATGGAG
ATGTAGTTGGGCAGCATTCATTTCCTGGCAGCCTTGGAATAGATGGCTTTGGCCAGTCAG
TTGGCATTCTTGGACGCCCTGCTACAGCTTACGGATTCCGCCCTGATGAACCTTACTACT
ATGGCTATGGATCTCGATAAAGTCATCCCTTTCCCTGTGTGCTCTCAGCTTAGAAGAGAT
CTGTGCAGTCTAGCTTAGCTTTGAATCTTGGCCTAATAATGCATGTTGATAATATTGCGG
TCTGTGTTTCTTTTTACTGTTCCATGTGATTAGCTCCAGATTAACTTCAGCCCCTTCTGT
CCTATGTTAAGTATACTTGATACTTGACACTGTTCACTTATCTTAATGCTGAGTAACATT
TCCCCTAAGACTCAAAAGTGAATGCTGAAAAGCAACTAGACTGGGAAACAAACTCTACAT
TATGTACATTAATTGACTAATTTAATTTCTATTAAAAAGAAGCATAAAGTACAAATGAAT
TAGCAGAAGTCATGTGTTTCTATTTAATGTATGTCATTAGGAGTTTACATGCTTTTAGGA
GTGCAATATGAATTTTATTTTTTCCTGTCCTTTTTCCCCCTTGTAAATCTCTTAAGTGGT
TCATATATGTGCTACCTTTAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATCAAGGAAACACAGGCTCCAGCATATCTCATAGATCTGATGCATGATAAAAATAATG
AAATTCGAAAAGTCTGTGATAATACATTAGATATTATAGCGGAATATGATGAAGAATGGG
CTAAGAAAATTCAGAGTGAAAAGTTTCGCTGGCATAACTCTCAGTGGCTGGAGATGGTAG
AGAGTCGTCAGATGGATGAGAGTGAGCAGTACTTGTATGGTGATGATCGAATTGAGCCAT
ACATCCATGAAGGAGATATTCTCGAGAGACCTGACCTTTTCTACAGCTCAGATGGATTAG
TTGCCTCTGAAGGAGCCATCAGTCCAGATTTCTTCAATGATTATCACCTTCAGAATGGAG
ATGTAGTTGGGCAGCATTCATTTCCTGGCAGCCTTGGAATAGATGGCTTTGGCCAGTCAG
TTGGCATTCTTGGACGCCCTGCTACAGCTTACGGATTCCGCCCTGATGAACCTTACTACT
ATGGCTATGGATCTCGATAAAGTCATCCCTTTCCCTGTGTGCTCTCAGCTTAGAAGAGAT
CTGTGCAGTCTAGCTTAGCTTTGAATCTTGGCCTAATAATGCATGTTGATAATATTGCGG
TCTGTGTTTCTTTTTACTGTTCCATGTGATTAGCTCCAGATTAACTTCAGCCCCTTCTGT
CCTATGTTAAGTATACTTGATACTTGACACTGTTCACTTATCTTAATGCTGAGTAACATT
TCCCCTAAGACTCAAAAGTGAATGCTGAAAAGCAACTAGACTGGGAAACAAACTCTACAT
TATGTACATTAATTGACTAATTTAATTTCTATTAAAAAGAAGCATAAAGTACAAATGAAT
TAGCAGAAGTCATGTGTTTCTATTTAATGTATGTCATTAGGAGTTTACATGCTTTTAGGA
GTGCAATATGAATTTTATTTTTTCCTGTCCTTTTTCCCCCTTGTAAATCTCTTAAGTGGT
TCATATATGTGCTACCTTTAAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               101-259, + strand, RNAz p=0.788738

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-259, + strand, RNAz p=0.788738

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               101-291, gnl|bosTau2|chr16 (25828213-25828023)
               

               
               101-291, gnl|Hg17|chr1 (166662035-166661845)
               

               
               101-291, gnl|Mm7|chr1 (163846712-163846902)
               


               
               390-984, gnl|bosTau2|chr16 (25792847-25792238)
               

               
               390-984, gnl|Hg17|chr1 (166622582-166621984)
               

               
               390-984, gnl|Mm7|chr1 (163879053-163879636)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-291, gnl|bosTau2|chr16 (25828213-25828023)
               

               
               101-291, gnl|Hg17|chr1 (166662035-166661845)
               

               
               101-291, gnl|Mm7|chr1 (163846712-163846902)
               


               
               390-984, gnl|bosTau2|chr16 (25792847-25792238)
               

               
               390-984, gnl|Hg17|chr1 (166622582-166621984)
               

               
               390-984, gnl|Mm7|chr1 (163879053-163879636)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               elu (0.385356)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               ret (0.257467)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               ret (0.257467)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)

	101-291, gnl\|bosTau2\|chr16 (25828213-25828023)
	101-291, gnl\|Hg17\|chr1 (166662035-166661845)
	101-291, gnl\|Mm7\|chr1 (163846712-163846902)

	390-984, gnl\|bosTau2\|chr16 (25792847-25792238)
	390-984, gnl\|Hg17\|chr1 (166622582-166621984)
	390-984, gnl\|Mm7\|chr1 (163879053-163879636)

	elu (0.385356)
	spc (0.340097)
	fhi (0.339155)
	ret (0.257467)
	ebs (0.236602)
	hea (0.204499)
	fcc (0.197785)
	fco (0.157208)
	bfe (0.149858)
	hyp (0.142837)
	lnt (0.142308)
	thg (0.126791)