Non-Coding RNA Search

Ss1.1-Pig4-TMW8003N24.3

Sequence:


               
               AACAAAAAGCAACTAATTTTTAAATTTGTTTCTCTTCTCATTCCTGTTTTCATTGATTTC
CCACATGTAGTCCTTTTGCTCAGGAAGTCTTTGGGGAAAATTAAGGCTCTTTGAAGCTCT
GAAATGGGTGATCAGGTTAGCGGTATTTGTCCACTGTCTGAGAGGTTGGAAAATAAACTA
CCCAAAATAGTCATCGAAATACTGAAAGCTTGATTTTCTCTTCATATTTGAATTAATTTC
TTCTGATTGACTGGAAGGGGTTTTTGTATAACTAAAATCTCAATGCATAAAGATTTAAAA
GGAGCACATCATGCAGTGGGTGAGCCATGAAACTAGAGATGGGATTTGGGGGTAAGTTTG
TTACCGTCTGAATTTTAATCCAGACATCTCTGTTAACATAAGCCTTTGGGAAGTCGCTTC
TCAGACGGTTTCTCCTTGTTGCCAAGAGGGCTGGCTTAGTTATTTGATAAAGCCCCTTCC
AGGCCCGAATTCCTCGACTATGATTTACTGTAGTGTCTTAACACCCTCTCACGTCACAGT
AGTGTGGAGCATTAGAGAAAAGCCTAAACTTTTAGTTGCTAGAGAGCCAGTTGAAATATC
ATTGATAGAATTTTAGTTTTAGGAAAAATTGGTTTGATTTCTAGCTTTATTACTATTAGG
TATGTGAGCTTGGGCAAATCGCTTAATCTTTGAGTCTAGTTTTCTCACTCATGAAATGAG
GATATTAGGCGAAATGATTTCTGAGTTTCCAGCTAGTCCTAGAGTTCTATATTTCTACAT
AGTTGAATTATTTTATCATGCTGTTGCTGGGGAATATGACTAACACTTTTGAAGCTACTA
ATTTTATGTCGAGCTTTAAAGTCCATAATTGTTATCTTCAGAAAATATTATTTGACCTAC
AGTATGTCCAAATCAATTTAATAAAATCACTTTATAACAGGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAAAAGCAACTAATTTTTAAATTTGTTTCTCTTCTCATTCCTGTTTTCATTGATTTC
CCACATGTAGTCCTTTTGCTCAGGAAGTCTTTGGGGAAAATTAAGGCTCTTTGAAGCTCT
GAAATGGGTGATCAGGTTAGCGGTATTTGTCCACTGTCTGAGAGGTTGGAAAATAAACTA
CCCAAAATAGTCATCGAAATACTGAAAGCTTGATTTTCTCTTCATATTTGAATTAATTTC
TTCTGATTGACTGGAAGGGGTTTTTGTATAACTAAAATCTCAATGCATAAAGATTTAAAA
GGAGCACATCATGCAGTGGGTGAGCCATGAAACTAGAGATGGGATTTGGGGGTAAGTTTG
TTACCGTCTGAATTTTAATCCAGACATCTCTGTTAACATAAGCCTTTGGGAAGTCGCTTC
TCAGACGGTTTCTCCTTGTTGCCAAGAGGGCTGGCTTAGTTATTTGATAAAGCCCCTTCC
AGGCCCGAATTCCTCGACTATGATTTACTGTAGTGTCTTAACACCCTCTCACGTCACAGT
AGTGTGGAGCATTAGAGAAAAGCCTAAACTTTTAGTTGCTAGAGAGCCAGTTGAAATATC
ATTGATAGAATTTTAGTTTTAGGAAAAATTGGTTTGATTTCTAGCTTTATTACTATTAGG
TATGTGAGCTTGGGCAAATCGCTTAATCTTTGAGTCTAGTTTTCTCACTCATGAAATGAG
GATATTAGGCGAAATGATTTCTGAGTTTCCAGCTAGTCCTAGAGTTCTATATTTCTACAT
AGTTGAATTATTTTATCATGCTGTTGCTGGGGAATATGACTAACACTTTTGAAGCTACTA
ATTTTATGTCGAGCTTTAAAGTCCATAATTGTTATCTTCAGAAAATATTATTTGACCTAC
AGTATGTCCAAATCAATTTAATAAAATCACTTTATAACAGGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               735-984, gnl|bosTau2|chr22 (13319711-13319960)
               

               
               735-984, gnl|Hg17|chr12 (123024647-123024854)
               

               
               735-984, gnl|Mm7|chr5 (124122676-124122881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               735-984, gnl|bosTau2|chr22 (13319711-13319960)
               

               
               735-984, gnl|Hg17|chr12 (123024647-123024854)
               

               
               735-984, gnl|Mm7|chr5 (124122676-124122881)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               rec (0.519211)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	735-984, gnl\|bosTau2\|chr22 (13319711-13319960)
	735-984, gnl\|Hg17\|chr12 (123024647-123024854)
	735-984, gnl\|Mm7\|chr5 (124122676-124122881)

	rec (0.519211)
	hea (0.408998)
	aor (0.390549)
	fbs (0.350693)
	spc (0.340097)
	vin (0.332557)
	mga (0.32041)
	tbr (0.308356)
	sug (0.254582)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	sag (0.182715)
	gul (0.177588)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	ski (0.146735)
	hlv (0.139256)
	ste (0.135208)
	ute (0.132784)
	ova (0.129132)
	thg (0.126791)
	nbm (0.0993246)
	ldo (0.0970026)