Non-Coding RNA Search

Ss1.1-Pig4-TMW8003P05.5

Sequence:


               
               TGTTTGAGATATTCTCTTTTGTACTCAGCGCATTTCGACGACCATCCTGTACCTGTCTTC
ACACACCCTTTTTGCAGTCCCTTTAGATCCTAATCCTGGTGTCTGTTCTTTTGCAACTAA
ATCGTTGGTACTCTTTAAATATCTACCATTGTATGTTCGCACACATACTTTGAGCATCTG
TTACCTCCCCGGTATTAGTCCTTTTTACATTCACCTATTCATTTAAAAATCCTTTAGTAG
ATCACAGAGTTCATTCCTCTAATGGCTTTTAGGGTTTCTACAGTGATTAATCAGGTCTGA
ATTAAACAAATCAGTGATAGGGAAGAAAATGAAAACAATTGCTGCTTATGCTTTATCTGA
AGGACTGAGTGTTGGTCTGTTATACCAGAAAATATCGTGTGAGGGTGATAATCTTTACTC
GACATTTTTTAGAGATGTCATTTTTAAGGGCCCTAATGCTTAGAATACCACAATCAGAAT
CGAAGCTCGTAGAGAAGGTAGAGACAGAAGACAGATAGTTCTACGCATATTCTGGTGTAA
GTCATTTTTATTTAACCAGCAATGAAAACCTTCAATGTATCTCTTGGGCACCCTCTCGCT
GCTCACCGTGAGTCAGGGTCACAGAAGATGCTTGATGTATTGTACCTCTGGTCCTAGATG
TCCTTTGTTAAAACTGGAAAATAAGACAGCAAAATGTATCTGGGCGGAAATGGCAAACTG
TTGATTTGTGAACTATAAATGTTCACTTTTTAAAAATAACGTAAAAGTGTAAACAAATTA
CTAATACTGAAGTGGATATAGCAGCAAAAAAAAAAAAAAAAATGTGACCGACCCTGTATT
TTGGTTATTGCTTTAATAAAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTGAGATATTCTCTTTTGTACTCAGCGCATTTCGACGACCATCCTGTACCTGTCTTC
ACACACCCTTTTTGCAGTCCCTTTAGATCCTAATCCTGGTGTCTGTTCTTTTGCAACTAA
ATCGTTGGTACTCTTTAAATATCTACCATTGTATGTTCGCACACATACTTTGAGCATCTG
TTACCTCCCCGGTATTAGTCCTTTTTACATTCACCTATTCATTTAAAAATCCTTTAGTAG
ATCACAGAGTTCATTCCTCTAATGGCTTTTAGGGTTTCTACAGTGATTAATCAGGTCTGA
ATTAAACAAATCAGTGATAGGGAAGAAAATGAAAACAATTGCTGCTTATGCTTTATCTGA
AGGACTGAGTGTTGGTCTGTTATACCAGAAAATATCGTGTGAGGGTGATAATCTTTACTC
GACATTTTTTAGAGATGTCATTTTTAAGGGCCCTAATGCTTAGAATACCACAATCAGAAT
CGAAGCTCGTAGAGAAGGTAGAGACAGAAGACAGATAGTTCTACGCATATTCTGGTGTAA
GTCATTTTTATTTAACCAGCAATGAAAACCTTCAATGTATCTCTTGGGCACCCTCTCGCT
GCTCACCGTGAGTCAGGGTCACAGAAGATGCTTGATGTATTGTACCTCTGGTCCTAGATG
TCCTTTGTTAAAACTGGAAAATAAGACAGCAAAATGTATCTGGGCGGAAATGGCAAACTG
TTGATTTGTGAACTATAAATGTTCACTTTTTAAAAATAACGTAAAAGTGTAAACAAATTA
CTAATACTGAAGTGGATATAGCAGCAAAAAAAAAAAAAAAAATGTGACCGACCCTGTATT
TTGGTTATTGCTTTAATAAAGGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               191-864, gnl|bosTau2|chr12 (28151005-28151690)
               

               
               191-864, gnl|Hg17|chr4 (171283150-171282496)
               

               
               191-864, gnl|Mm7|chr8 (59067722-59068370)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-864, gnl|bosTau2|chr12 (28151005-28151690)
               

               
               191-864, gnl|Hg17|chr4 (171283150-171282496)
               

               
               191-864, gnl|Mm7|chr8 (59067722-59068370)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               lun (0.150489)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

	191-864, gnl\|bosTau2\|chr12 (28151005-28151690)
	191-864, gnl\|Hg17\|chr4 (171283150-171282496)
	191-864, gnl\|Mm7\|chr8 (59067722-59068370)

	lun (0.150489)
	liv (0.146284)
	pty (0.142714)
	kid (0.129735)
	spc (0.113366)