Non-Coding RNA Search

Ss1.1-Pig4-TMW8004A15.3

Sequence:


               
               CGGTGGGTGACACATCCCTGAGAATCTACAAGTGGGTCCCTGTGACGGAGCCAAAGGTTG
ACGATAAAAACAAGAACAAGAAAAAGGGCAAAGATGAGAAGTGTGGCTCTGAGGTGACCA
CCCCGGAGAACAGCTCCTCCCCGGGAATGATGGACATGCACGATGATAACAGCAACCAGA
GCTCCATCGCAGATGCTTCCCCCATCAAACAAGAGAACAGCAGCAACTCCAGCCCTGCCC
CAGAGCCCAACTCAGCCGTGCCTGGTGATGGCACCGCGCCCAAAGGGCTCCCAGGGCAAA
CTCATTCCCCGACAAACTTGAACTTGGGGACGCTGCAGCTACACATTCCACAAAGTGCTG
GCACTTACACCCATAACCCGAAGGCAGTAGACCGCCTCACAGGGTGGTGACCTCCCATTG
CAAACGACGTCATGGTTTGGAATGTTCGTTATCAGCCAAGGACCTGGTTAGAGGTATACA
GACCTTTTTTCACCGTTACCTAATTTTTGTTTCTCCTTTCGGTTTTGTTTTGTTTTGTTT
TGGTGTGTTGTACAGCAGTATAATTTTTCACTTATTTATTCCATCAGTAGATATGGTTTG
TACAATGTACAATGGTTCCATTTCAGAAAATAAAAAAAAAATTCAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGGGTGACACATCCCTGAGAATCTACAAGTGGGTCCCTGTGACGGAGCCAAAGGTTG
ACGATAAAAACAAGAACAAGAAAAAGGGCAAAGATGAGAAGTGTGGCTCTGAGGTGACCA
CCCCGGAGAACAGCTCCTCCCCGGGAATGATGGACATGCACGATGATAACAGCAACCAGA
GCTCCATCGCAGATGCTTCCCCCATCAAACAAGAGAACAGCAGCAACTCCAGCCCTGCCC
CAGAGCCCAACTCAGCCGTGCCTGGTGATGGCACCGCGCCCAAAGGGCTCCCAGGGCAAA
CTCATTCCCCGACAAACTTGAACTTGGGGACGCTGCAGCTACACATTCCACAAAGTGCTG
GCACTTACACCCATAACCCGAAGGCAGTAGACCGCCTCACAGGGTGGTGACCTCCCATTG
CAAACGACGTCATGGTTTGGAATGTTCGTTATCAGCCAAGGACCTGGTTAGAGGTATACA
GACCTTTTTTCACCGTTACCTAATTTTTGTTTCTCCTTTCGGTTTTGTTTTGTTTTGTTT
TGGTGTGTTGTACAGCAGTATAATTTTTCACTTATTTATTCCATCAGTAGATATGGTTTG
TACAATGTACAATGGTTCCATTTCAGAAAATAAAAAAAAAATTCAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50756399|ref|XP_415148.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50756399|ref|XP_415148.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               66-166, gnl|bosTau2|chr17 (28906095-28906195)
               

               
               66-166, gnl|Hg17|chr12 (120935957-120936057)
               

               
               66-166, gnl|Mm7|chr5 (122600516-122600616)
               


               
               270-648, gnl|bosTau2|chr17 (28923896-28924272)
               

               
               270-648, gnl|Hg17|chr12 (120962290-120962664)
               

               
               270-648, gnl|Mm7|chr5 (122618261-122618652)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-166, gnl|bosTau2|chr17 (28906095-28906195)
               

               
               66-166, gnl|Hg17|chr12 (120935957-120936057)
               

               
               66-166, gnl|Mm7|chr5 (122600516-122600616)
               


               
               270-648, gnl|bosTau2|chr17 (28923896-28924272)
               

               
               270-648, gnl|Hg17|chr12 (120962290-120962664)
               

               
               270-648, gnl|Mm7|chr5 (122618261-122618652)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	66-166, gnl\|bosTau2\|chr17 (28906095-28906195)
	66-166, gnl\|Hg17\|chr12 (120935957-120936057)
	66-166, gnl\|Mm7\|chr5 (122600516-122600616)

	270-648, gnl\|bosTau2\|chr17 (28923896-28924272)
	270-648, gnl\|Hg17\|chr12 (120962290-120962664)
	270-648, gnl\|Mm7\|chr5 (122618261-122618652)