Non-Coding RNA Search

Ss1.1-Pig4-TMW8004A16.5

Sequence:


               
               TGTGGCCTTAAGAAATCAGATCTTGGGGAGAGTCCCTTCCTTCATGACTGGCCTCCCATA
AGACTGATGCAAATTTGGCCAGAGATGACCTCAAGGCCCACCAAATTGAGCACAACTTCC
CACTGGGGGCTTTGGTTCTTGATCGTAAGCTTATGGGTCCATTCTGACCAAGAAAAGCCC
ATCAAATCAATGCTTCAACATCCAAGTTGAAGTTTAATCATTTTGGCTGCTGCCCTTTAA
TCTTCCTCTAGCATGCATGCAGTCCAAGGAGTATAAAAAGTGGTTATGTAGGGAACCAAG
GTTACTTTCATGTTCTTGGAAAACAAATTTCTAAATTACAGTTCCAAAATTAGTTATTTT
TACTGTCATTTAAAGTTTTTTCCAGTATTAAACCCTAGGAGTTTTCAGCAATACTAATAT
TCAATTTTTTAATTTTTTTAAGTCTAATTTAATTTTGTTATCTTGGTTTTATGTTGTCTT
CACCAAATTTATTAATGTCCGTTTTGTTATGTCCTCTTTTATTTCTTTCCTTTAAGACCT
GTTTTGTGTTTGTTTTGTTTCATTAATAACTCCAAAAAATTCCTTAGAATTCTCTACAGA
TTTCATGTAGCTACTTATGGGTAGCTTCTTAATTTGGTAATTGTTCTGATCACTAGACAT
TATTATATCCTCTGTCCATCTTGGGACTGTCATTAACATTATCTTAGTGATTGTGTGTTC
AAACACATAAAGAATTGGCAAAAAACACTTCCTACAGACCTTACAACAAGTTTTAAAGTT
ACATTTCTGTACATCTACATTATATCTTCTTAGCCATTAATGTAATTCCTTTGGATAAAG
ATAATATATTCAGAAAATATTGGGACCAAAAAATGCACTTGTTTCTTGCCCATATATATA
TAGATGTATATTTTTTTTAATTTTGTGTTTGTTTATTTTGGTTACATTGAATATAGATTT
GCTGAACAGTTTTGATGTTATTACTTATTTTTTTAATAAAATTTGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGCCTTAAGAAATCAGATCTTGGGGAGAGTCCCTTCCTTCATGACTGGCCTCCCATA
AGACTGATGCAAATTTGGCCAGAGATGACCTCAAGGCCCACCAAATTGAGCACAACTTCC
CACTGGGGGCTTTGGTTCTTGATCGTAAGCTTATGGGTCCATTCTGACCAAGAAAAGCCC
ATCAAATCAATGCTTCAACATCCAAGTTGAAGTTTAATCATTTTGGCTGCTGCCCTTTAA
TCTTCCTCTAGCATGCATGCAGTCCAAGGAGTATAAAAAGTGGTTATGTAGGGAACCAAG
GTTACTTTCATGTTCTTGGAAAACAAATTTCTAAATTACAGTTCCAAAATTAGTTATTTT
TACTGTCATTTAAAGTTTTTTCCAGTATTAAACCCTAGGAGTTTTCAGCAATACTAATAT
TCAATTTTTTAATTTTTTTAAGTCTAATTTAATTTTGTTATCTTGGTTTTATGTTGTCTT
CACCAAATTTATTAATGTCCGTTTTGTTATGTCCTCTTTTATTTCTTTCCTTTAAGACCT
GTTTTGTGTTTGTTTTGTTTCATTAATAACTCCAAAAAATTCCTTAGAATTCTCTACAGA
TTTCATGTAGCTACTTATGGGTAGCTTCTTAATTTGGTAATTGTTCTGATCACTAGACAT
TATTATATCCTCTGTCCATCTTGGGACTGTCATTAACATTATCTTAGTGATTGTGTGTTC
AAACACATAAAGAATTGGCAAAAAACACTTCCTACAGACCTTACAACAAGTTTTAAAGTT
ACATTTCTGTACATCTACATTATATCTTCTTAGCCATTAATGTAATTCCTTTGGATAAAG
ATAATATATTCAGAAAATATTGGGACCAAAAAATGCACTTGTTTCTTGCCCATATATATA
TAGATGTATATTTTTTTTAATTTTGTGTTTGTTTATTTTGGTTACATTGAATATAGATTT
GCTGAACAGTTTTGATGTTATTACTTATTTTTTTAATAAAATTTGTAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1008, gnl|bosTau2|chrX (4038022-4039021)
               

               
               3-1008, gnl|Hg17|chrX (129063918-129062265)
               

               
               3-1008, gnl|Mm7|chrX (43634955-43633932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1008, gnl|bosTau2|chrX (4038022-4039021)
               

               
               3-1008, gnl|Hg17|chrX (129063918-129062265)
               

               
               3-1008, gnl|Mm7|chrX (43634955-43633932)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               gul (0.177588)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               gul (0.177588)

	3-1008, gnl\|bosTau2\|chrX (4038022-4039021)
	3-1008, gnl\|Hg17\|chrX (129063918-129062265)
	3-1008, gnl\|Mm7\|chrX (43634955-43633932)