Non-Coding RNA Search

Ss1.1-Pig4-TMW8004C12.3

Sequence:


               
               CGATAGTTTGTGAACTCATTTGTGATCTGTTGAAAAGAGATTGTATTAAAACAAGTAAAA
ATGTTACTCCTCTCTGTCCTCTGAATTGACTTCAGTGGATGCTCTTAGTCATCCAACCTT
TTTGCCCTGTTTAATTGATCCCCTGAGGTGGTCTTTTGCTTTAAATCGGGGAAACAGGGG
TGGATCTCCAGGTACGTGTGGATCTTGTGTATACATGGAGATTTTTAGAAAAATGACCAA
CAACCCAGTACTAGATGCAAGTCACTAAAGAGTGTCCTCCTAAAACAGATCCATCTTTTT
CCTCATCTTGCTTTACACCAAGTAATGCTCTTTAAGTATGTACAGAAACTAAACAGATTT
CTGCCCCTAGCTATTTTCTAATGCATTACTTTAAAATTCTTATTTTGTCTCTATCAGTAT
CTTATTAACAATGGAAAAAATACATATATATATTTTATTGGAAAACTATAGTTTGTTAGG
ACTTGAGAGTTTTGTGACAGGTTTCTTTTGGTGTGTCTCATCACGACCACTGACTCCTTT
ATGGCATGCTTTGATTACTAGACCTCAGGCTGTCTCTTTTGTTGTATCATACTTATACAC
AGTAAACTTTCCTTTCCATGTGTCTGAGTCTGAGGTTTTGAAGTTTATAATAGAAAATGT
GCCAGTATGAATACAAGCAGTTGATTTCAGTAATTTGGACTTTTCTTAAAATGCAGAAAT
TTGAAGTAGAGGCGTGTCCATTGGTGTCAGAATAGAGTGGGTGAGGGGTCTGCATCAGGA
CCAAAGTTCATTAGACGGAAGAGCAATCAACTGAAGTGGTCTGTTTCAAGAGCAGAAGGG
GAGGAAGAGTGAGACACCGTGGTTGTACACACCTCTTGTCCTTAGATTTCCCTCCCTCTC
TTGTCCTTCCATCCCCAACTTCTCTGGCCTGTTGTCAGTGTTGTTTATTTATGCTATGGA
AAGGAGAACAGAAGTAAGCTTCCCACACTTTGCCTAATTGAGCCACTACCAGGTTTGCTG
GCAGCTTTGGCCACATTATTTGTGAGGTGATTTTCTTTGTGTTCAGAGTGACTTTTGATT
CTGATTCTTTATGTTGTTTTGTATGGAGCGGCACTTTATCTGTGTTTTAGCAGAACTGTT
CCTCTGTACCCTTTACGGTTTTTCCTTGTTTTTGTTTCCTTTTTAAATTATGCATTGAGT
TTTTTGTGTGTGTGAAATTAAAGCCTTTATTAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATAGTTTGTGAACTCATTTGTGATCTGTTGAAAAGAGATTGTATTAAAACAAGTAAAA
ATGTTACTCCTCTCTGTCCTCTGAATTGACTTCAGTGGATGCTCTTAGTCATCCAACCTT
TTTGCCCTGTTTAATTGATCCCCTGAGGTGGTCTTTTGCTTTAAATCGGGGAAACAGGGG
TGGATCTCCAGGTACGTGTGGATCTTGTGTATACATGGAGATTTTTAGAAAAATGACCAA
CAACCCAGTACTAGATGCAAGTCACTAAAGAGTGTCCTCCTAAAACAGATCCATCTTTTT
CCTCATCTTGCTTTACACCAAGTAATGCTCTTTAAGTATGTACAGAAACTAAACAGATTT
CTGCCCCTAGCTATTTTCTAATGCATTACTTTAAAATTCTTATTTTGTCTCTATCAGTAT
CTTATTAACAATGGAAAAAATACATATATATATTTTATTGGAAAACTATAGTTTGTTAGG
ACTTGAGAGTTTTGTGACAGGTTTCTTTTGGTGTGTCTCATCACGACCACTGACTCCTTT
ATGGCATGCTTTGATTACTAGACCTCAGGCTGTCTCTTTTGTTGTATCATACTTATACAC
AGTAAACTTTCCTTTCCATGTGTCTGAGTCTGAGGTTTTGAAGTTTATAATAGAAAATGT
GCCAGTATGAATACAAGCAGTTGATTTCAGTAATTTGGACTTTTCTTAAAATGCAGAAAT
TTGAAGTAGAGGCGTGTCCATTGGTGTCAGAATAGAGTGGGTGAGGGGTCTGCATCAGGA
CCAAAGTTCATTAGACGGAAGAGCAATCAACTGAAGTGGTCTGTTTCAAGAGCAGAAGGG
GAGGAAGAGTGAGACACCGTGGTTGTACACACCTCTTGTCCTTAGATTTCCCTCCCTCTC
TTGTCCTTCCATCCCCAACTTCTCTGGCCTGTTGTCAGTGTTGTTTATTTATGCTATGGA
AAGGAGAACAGAAGTAAGCTTCCCACACTTTGCCTAATTGAGCCACTACCAGGTTTGCTG
GCAGCTTTGGCCACATTATTTGTGAGGTGATTTTCTTTGTGTTCAGAGTGACTTTTGATT
CTGATTCTTTATGTTGTTTTGTATGGAGCGGCACTTTATCTGTGTTTTAGCAGAACTGTT
CCTCTGTACCCTTTACGGTTTTTCCTTGTTTTTGTTTCCTTTTTAAATTATGCATTGAGT
TTTTTGTGTGTGTGAAATTAAAGCCTTTATTAACCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               527-638, - strand, RNAz p=0.7937
               

               
               933-1086, + strand, RNAz p=0.664159

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               527-638, - strand, RNAz p=0.7937
               

               
               933-1086, + strand, RNAz p=0.664159

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020935, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020935, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-1236, gnl|bosTau2|chr2 (59637947-59639152)
               

               
               4-1236, gnl|Hg17|chr2 (219141757-219140481)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1236, gnl|bosTau2|chr2 (59637947-59639152)
               

               
               4-1236, gnl|Hg17|chr2 (219141757-219140481)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eru (0.240096)
               

               
               mas (0.210305)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)

	527-638, - strand, RNAz p=0.7937
	933-1086, + strand, RNAz p=0.664159

	4-1236, gnl\|bosTau2\|chr2 (59637947-59639152)
	4-1236, gnl\|Hg17\|chr2 (219141757-219140481)

	eru (0.240096)
	mas (0.210305)
	rec (0.17307)
	eye (0.170503)
	lun (0.150489)
	nmm (0.132802)
	ova (0.129132)