Non-Coding RNA Search

Ss1.1-Pig4-TMW8004C13.3.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTATTAATAACCAAACTTTTATGAACTATTACTAAGAA
ATTCAGCAAGGAGGCAATAGTTTAGTGATCTTTTAGTAAACATTTTTAGCATAACAGTCG
ATGGGACCCAGTATTTTTTAAAAATCAAGCTTATAAATACCATTGCTCTGTATTCAACTG
GTATACACTGAAAAGAGGATAATAAATGGAAATACATGTTCTGAAAGCATTTCCACAGGA
AATGTTCATATTTTTGATGACATTCTAAATCAGCAGTTACATAAGCTACATTGACTAAAA
CACAGGTGTTCTTTATTGCACATTTCAACGTTGTAAGGAGGCTCTAGCTCACGAGGTGAT
TTTCAAGGGGAAATGATATTTTTTAAAGTGTTTGGCTCAAAAATGCACACTGCCAAGGCA
GCTTAGTTCTAAAAACAAATCTTTTAAAATAAACTTTTGGATGTTGAAGCCAGTGAGATC
CTTGCCTGTAATGCATGGTGCGCAGTCCACGTCTCGGACTGCCCGCCCGGGGTCATGATT
ACGGGCTCTGTTTTAAAGCCTGGGCACAGTCCTGGCCGGCGCTTGGGGAGGCGGGCTGGG
GCTCGTCCCTCGAGCCGGAAGGTGCCAAGTCTCTTGCAGCAGAGGAAGGGGGGTAATCCT
GGGGGCCGTGGGGCGGAGGAGGGAGCCGGGCACCAGGCATAAAGTACTCTCTTGGACCCA
GAGGGCCTACAGGTCTAAAGGGTGCGTGTCCTGGTAAAAATTCTCGAGGGTCGAGAGGCA
GGTCCCGTTTTCCTGGTGGCACGCCTGGTGCATATTCTCTTAATCCTAGTGGGGGACACA
ACCCGGGACCGAAAGGCGGAGGAAGCGGCCGGGGCCCGAAAGGCCCGCAGAGCTGAGGCG
GAGGTCCGTATCGAATGGCCGGCAGCAGCGGGCCTCCCCCGGGGGAGCTCAGGAGGGGCG
CCCCTGGGAAAGGAGGGGGCCCCCGGGCAGCCATGTTAACCTTGCCCTCATCCGTCACCT
TGGAGGGGGAAGAGCTTCTTGAGCTGCTGTTTATCATGGGAGCCGATTCTGGGTCAGAGG
CAGAGGGTTTCCCAGATGCCTCAGGCGGCCACCGAGGACGAGGTGGCGGCCCATCCACTG
ACCCGAAGTCGCTTCGGGGCATCTCTCTTCGACTGAGCGTGGCCGACAGAGGCCTTGCCG
GCGGGTCTGCTGTCAGCGGCGGGGAGCATTCGCCACCGCTCACGGGAGATGGGCCGAAAG
AGCCGTTCTGGCTCAGGGGACCTCTCCGAGGAGGGTTCTGGGTGTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTATTAATAACCAAACTTTTATGAACTATTACTAAGAA
ATTCAGCAAGGAGGCAATAGTTTAGTGATCTTTTAGTAAACATTTTTAGCATAACAGTCG
ATGGGACCCAGTATTTTTTAAAAATCAAGCTTATAAATACCATTGCTCTGTATTCAACTG
GTATACACTGAAAAGAGGATAATAAATGGAAATACATGTTCTGAAAGCATTTCCACAGGA
AATGTTCATATTTTTGATGACATTCTAAATCAGCAGTTACATAAGCTACATTGACTAAAA
CACAGGTGTTCTTTATTGCACATTTCAACGTTGTAAGGAGGCTCTAGCTCACGAGGTGAT
TTTCAAGGGGAAATGATATTTTTTAAAGTGTTTGGCTCAAAAATGCACACTGCCAAGGCA
GCTTAGTTCTAAAAACAAATCTTTTAAAATAAACTTTTGGATGTTGAAGCCAGTGAGATC
CTTGCCTGTAATGCATGGTGCGCAGTCCACGTCTCGGACTGCCCGCCCGGGGTCATGATT
ACGGGCTCTGTTTTAAAGCCTGGGCACAGTCCTGGCCGGCGCTTGGGGAGGCGGGCTGGG
GCTCGTCCCTCGAGCCGGAAGGTGCCAAGTCTCTTGCAGCAGAGGAAGGGGGGTAATCCT
GGGGGCCGTGGGGCGGAGGAGGGAGCCGGGCACCAGGCATAAAGTACTCTCTTGGACCCA
GAGGGCCTACAGGTCTAAAGGGTGCGTGTCCTGGTAAAAATTCTCGAGGGTCGAGAGGCA
GGTCCCGTTTTCCTGGTGGCACGCCTGGTGCATATTCTCTTAATCCTAGTGGGGGACACA
ACCCGGGACCGAAAGGCGGAGGAAGCGGCCGGGGCCCGAAAGGCCCGCAGAGCTGAGGCG
GAGGTCCGTATCGAATGGCCGGCAGCAGCGGGCCTCCCCCGGGGGAGCTCAGGAGGGGCG
CCCCTGGGAAAGGAGGGGGCCCCCGGGCAGCCATGTTAACCTTGCCCTCATCCGTCACCT
TGGAGGGGGAAGAGCTTCTTGAGCTGCTGTTTATCATGGGAGCCGATTCTGGGTCAGAGG
CAGAGGGTTTCCCAGATGCCTCAGGCGGCCACCGAGGACGAGGTGGCGGCCCATCCACTG
ACCCGAAGTCGCTTCGGGGCATCTCTCTTCGACTGAGCGTGGCCGACAGAGGCCTTGCCG
GCGGGTCTGCTGTCAGCGGCGGGGAGCATTCGCCACCGCTCACGGGAGATGGGCCGAAAG
AGCCGTTCTGGCTCAGGGGACCTCTCCGAGGAGGGTTCTGGGTGTTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8C5B9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C5B9_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               214-325, + strand, RNAz p=0.76309
               

               
               1165-1283, + strand, RNAz p=0.653194

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               214-325, + strand, RNAz p=0.76309
               

               
               1165-1283, + strand, RNAz p=0.653194

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               26-854, gnl|bosTau2|chr16 (13342177-13343029)
               

               
               26-854, gnl|Hg17|chr1 (219227879-219227041)
               

               
               26-854, gnl|Mm7|chrUn_random (7914488-7915316)
               


               
               1143-1283, gnl|bosTau2|chr16 (13346925-13347065)
               

               
               1143-1283, gnl|Hg17|chr1 (219222052-219221912)
               

               
               1143-1283, gnl|Mm7|chrUn_random (7918453-7918593)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-854, gnl|bosTau2|chr16 (13342177-13343029)
               

               
               26-854, gnl|Hg17|chr1 (219227879-219227041)
               

               
               26-854, gnl|Mm7|chrUn_random (7914488-7915316)
               


               
               1143-1283, gnl|bosTau2|chr16 (13346925-13347065)
               

               
               1143-1283, gnl|Hg17|chr1 (219222052-219221912)
               

               
               1143-1283, gnl|Mm7|chrUn_random (7918453-7918593)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               mgp (0.461361)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	214-325, + strand, RNAz p=0.76309
	1165-1283, + strand, RNAz p=0.653194

	26-854, gnl\|bosTau2\|chr16 (13342177-13343029)
	26-854, gnl\|Hg17\|chr1 (219227879-219227041)
	26-854, gnl\|Mm7\|chrUn_random (7914488-7915316)

	1143-1283, gnl\|bosTau2\|chr16 (13346925-13347065)
	1143-1283, gnl\|Hg17\|chr1 (219222052-219221912)
	1143-1283, gnl\|Mm7\|chrUn_random (7918453-7918593)

	mgp (0.461361)
	sag (0.36543)
	fbs (0.350693)
	rec (0.346141)
	fat (0.294855)
	cte (0.29274)
	fce (0.271592)
	ssp (0.271039)
	thg (0.253582)
	ece (0.229305)
	tes (0.207814)
	nbm (0.198649)
	mcp (0.170648)
	tbr (0.154178)
	lun (0.150489)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	clu (0.119646)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)