Ss1.1-Pig4-TMW8004C18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACCGCGAGCAGAGCGCCCCCGAGCAGCTCCCGCGCCCCGCGCTCCTCCTCGGGAAGCA CCTCGAGCTCGAGACGCCCGCAGCCCGTCCGCCGCGCACCCGTGTGTCGCCGTCTCGGCC TCCGCGCTCGCCCCGACCCTCCTGCGCGCCGCGATGAGCTCCCGCACCGCCAGGACGCTC GCCCTCGCCGTCACCCTGCTCCACTTGGCCAGGCTGGCGCTCTCCACCTGCCCCGCCGCC TGCCACTGCCCCCTGGAGGCGCCCAAGTGCGCCCCCGGAGTCGGCCTGGTCGGGGACGGC TGCGGCTGCTGCAAGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAAGACGCAGCCC TGCGACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCCCCACCGCTCAGAAGGGG ATCTGCAGAGCTCAGTCAGAGGGCAGACCCTGCGAATATAACTCCAGAATCTACCAGAAT GGGGAGAGTTTCCAGCCCAACTGTAAACACCAGTGCACATGCATCGACGGCGCCGTGGGC TGCGTTCCGCTGTGCCCGCAGGAGCTCTCCCTCCCCGACCTGGGCTGCCCCAACCCCCGG CTGGTCAAAGTCACCGGGCAGTGCTGCGAGGAGTGGCTCTGCGACGAGGACGGTGCCAAG GACCCCATGGACGACAGGGACGGCCTCCCGGGCAAGGCGCTGGCCTTCGATGCCTCCGAG GTGGAGTTAACGAGAAACAACGAATTAATTGCCTTTGGAAAAGGCGGCTCCCTGAAGCGG CTCCCGGGTAAGTGAAGACGGAGGTTCTGAAAAATCTAGTCCTAGTCGGAAGCCTCAGAG AGATGAGCACTTCCTTGCACGTGTGTCCCGTGCCTCTGAGAAATCTCTTCTGTGTCTCTA GTTTTCCGAGCGGAGCCTCGCGTTCTCTACACCCCTCCTCTGCTCGGCCAGAAATGCATC GTTCAAACCACGTCGTGGTCCCAGTGCTCAAAGACCTGCGGAACTGGCATCTCCACCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACCGCGAGCAGAGCGCCCCCGAGCAGCTCCCGCGCCCCGCGCTCCTCCTCGGGAAGCA CCTCGAGCTCGAGACGCCCGCAGCCCGTCCGCCGCGCACCCGTGTGTCGCCGTCTCGGCC TCCGCGCTCGCCCCGACCCTCCTGCGCGCCGCGATGAGCTCCCGCACCGCCAGGACGCTC GCCCTCGCCGTCACCCTGCTCCACTTGGCCAGGCTGGCGCTCTCCACCTGCCCCGCCGCC TGCCACTGCCCCCTGGAGGCGCCCAAGTGCGCCCCCGGAGTCGGCCTGGTCGGGGACGGC TGCGGCTGCTGCAAGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAAGACGCAGCCC TGCGACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCCCCACCGCTCAGAAGGGG ATCTGCAGAGCTCAGTCAGAGGGCAGACCCTGCGAATATAACTCCAGAATCTACCAGAAT GGGGAGAGTTTCCAGCCCAACTGTAAACACCAGTGCACATGCATCGACGGCGCCGTGGGC TGCGTTCCGCTGTGCCCGCAGGAGCTCTCCCTCCCCGACCTGGGCTGCCCCAACCCCCGG CTGGTCAAAGTCACCGGGCAGTGCTGCGAGGAGTGGCTCTGCGACGAGGACGGTGCCAAG GACCCCATGGACGACAGGGACGGCCTCCCGGGCAAGGCGCTGGCCTTCGATGCCTCCGAG GTGGAGTTAACGAGAAACAACGAATTAATTGCCTTTGGAAAAGGCGGCTCCCTGAAGCGG CTCCCGGGTAAGTGAAGACGGAGGTTCTGAAAAATCTAGTCCTAGTCGGAAGCCTCAGAG AGATGAGCACTTCCTTGCACGTGTGTCCCGTGCCTCTGAGAAATCTCTTCTGTGTCTCTA GTTTTCCGAGCGGAGCCTCGCGTTCTCTACACCCCTCCTCTGCTCGGCCAGAAATGCATC GTTCAAACCACGTCGTGGTCCCAGTGCTCAAAGACCTGCGGAACTGGCATCTCCACCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 468-589, - strand, RNAz p=0.941129 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 468-589, - strand, RNAz p=0.941129 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 9-217, gnl|bosTau2|chr3 (44060184-44059973) | |
| 9-217, gnl|canFam2|chr6 (65505456-65505000) | |
| 9-217, gnl|dasNov1|scaffold_137481 (60-522) | |
| 9-217, gnl|echTel1|scaffold_280602 (5745-5338) | |
| 9-217, gnl|hg17|chr1 (85758464-85758896) | |
| 9-217, gnl|Hg17|chr1 (85758533-85758752) | |
| 9-217, gnl|loxAfr1|scaffold_3397 (1159-1590) | |
| 9-217, gnl|mm7|chr3 (145547148-145546767) | |
| 9-217, gnl|Mm7|chr3 (145547077-145546893) | |
| 9-217, gnl|monDom2|scaffold_16 (1170285-1169752) | |
| 9-217, gnl|oryCun1|scaffold_207714 (86103-86526) | |
| 9-217, gnl|panTro1|chr1 (84438055-84438487) | |
| 9-217, gnl|rheMac2|chr1 (88363507-88363938) | |
| 9-217, gnl|rn3|chr2 (243814010-243813620) | |
| 429-1020, gnl|bosTau2|chr3 (44059099-44058496) | |
| 429-1020, gnl|canFam2|chr6 (65504359-65503897) | |
| 429-1020, gnl|danRer3|chrNA (113676682-113677129) | |
| 429-1020, gnl|dasNov1|scaffold_137481 (1194-1649) | |
| 429-1020, gnl|echTel1|scaffold_280602 (4695-4231) | |
| 429-1020, gnl|fr1|chrUn (116027138-116027554) | |
| 429-1020, gnl|galGal2|chr8 (16530840-16530395) | |
| 429-1020, gnl|hg17|chr1 (85759538-85760003) | |
| 429-1020, gnl|Hg17|chr1 (85759630-85760235) | |
| 429-1020, gnl|loxAfr1|scaffold_3397 (2233-2694) | |
| 429-1020, gnl|mm7|chr3 (145546130-145545684) | |
| 429-1020, gnl|Mm7|chr3 (145546043-145545454) | |
| 429-1020, gnl|monDom2|scaffold_16 (1169100-1168620) | |
| 429-1020, gnl|oryCun1|scaffold_207714 (87191-87663) | |
| 429-1020, gnl|panTro1|chr1 (84439130-84439595) | |
| 429-1020, gnl|rheMac2|chr1 (88364510-88364975) | |
| 429-1020, gnl|rn3|chr2 (243812966-243812522) | |
| 429-1020, gnl|tetNig1|chr1 (16334383-16334808) | |
| 429-1020, gnl|xenTro1|scaffold_264 (1309826-1309387) | |
| 471-694, gnl|bosTau2|chr14 (3827825-3827608) | |
| 471-694, gnl|Hg17|chr8 (134302043-134302260) | |
| 471-694, gnl|Mm7|chr15 (66996545-66996762) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-217, gnl|bosTau2|chr3 (44060184-44059973) | |
| 9-217, gnl|canFam2|chr6 (65505456-65505000) | |
| 9-217, gnl|dasNov1|scaffold_137481 (60-522) | |
| 9-217, gnl|echTel1|scaffold_280602 (5745-5338) | |
| 9-217, gnl|hg17|chr1 (85758464-85758896) | |
| 9-217, gnl|Hg17|chr1 (85758533-85758752) | |
| 9-217, gnl|loxAfr1|scaffold_3397 (1159-1590) | |
| 9-217, gnl|mm7|chr3 (145547148-145546767) | |
| 9-217, gnl|Mm7|chr3 (145547077-145546893) | |
| 9-217, gnl|monDom2|scaffold_16 (1170285-1169752) | |
| 9-217, gnl|oryCun1|scaffold_207714 (86103-86526) | |
| 9-217, gnl|panTro1|chr1 (84438055-84438487) | |
| 9-217, gnl|rheMac2|chr1 (88363507-88363938) | |
| 9-217, gnl|rn3|chr2 (243814010-243813620) | |
| 429-1020, gnl|bosTau2|chr3 (44059099-44058496) | |
| 429-1020, gnl|canFam2|chr6 (65504359-65503897) | |
| 429-1020, gnl|danRer3|chrNA (113676682-113677129) | |
| 429-1020, gnl|dasNov1|scaffold_137481 (1194-1649) | |
| 429-1020, gnl|echTel1|scaffold_280602 (4695-4231) | |
| 429-1020, gnl|fr1|chrUn (116027138-116027554) | |
| 429-1020, gnl|galGal2|chr8 (16530840-16530395) | |
| 429-1020, gnl|hg17|chr1 (85759538-85760003) | |
| 429-1020, gnl|Hg17|chr1 (85759630-85760235) | |
| 429-1020, gnl|loxAfr1|scaffold_3397 (2233-2694) | |
| 429-1020, gnl|mm7|chr3 (145546130-145545684) | |
| 429-1020, gnl|Mm7|chr3 (145546043-145545454) | |
| 429-1020, gnl|monDom2|scaffold_16 (1169100-1168620) | |
| 429-1020, gnl|oryCun1|scaffold_207714 (87191-87663) | |
| 429-1020, gnl|panTro1|chr1 (84439130-84439595) | |
| 429-1020, gnl|rheMac2|chr1 (88364510-88364975) | |
| 429-1020, gnl|rn3|chr2 (243812966-243812522) | |
| 429-1020, gnl|tetNig1|chr1 (16334383-16334808) | |
| 429-1020, gnl|xenTro1|scaffold_264 (1309826-1309387) | |
| 471-694, gnl|bosTau2|chr14 (3827825-3827608) | |
| 471-694, gnl|Hg17|chr8 (134302043-134302260) | |
| 471-694, gnl|Mm7|chr15 (66996545-66996762) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |